BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D4Rat139 (644 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.10165 Rattus norvegicus MIS type II receptor (RATMRII... 155 2e-37 gnl|UG|Rn.9961 Rat transferrin receptor mRNA, 3' end /cds=(0,18... 46 1e-04 gnl|UG|Rn.33299 UI-R-C0-jh-e-10-0-UI.s1 Rattus norvegicus cDNA,... 34 0.49 gnl|UG|Rn.29975 Rattus norvegicus integrin alpha E2 mRNA, parti... 34 0.49 gnl|UG|Rn.6831 EST194646 Rattus norvegicus cDNA, 3' end /clone=... 34 0.49 >gnl|UG|Rn.10165 Rattus norvegicus MIS type II receptor (RATMRII) mRNA, complete cds /cds=(75,1748) /gb=U42427 /gi=1147778 /len=1938 Length = 1938 Score = 155 bits (78), Expect = 2e-37 Identities = 80/81 (98%), Positives = 80/81 (98%) Query: 299 cagctctccagagagcggatgtttactctctggctctactactgtgggagatcctgagcc 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1277 cagctctccagagagcggatgtttactctctggctctactactgtgggagatcctgagcc 1336 Query: 359 gctgttccgatttgaggnctg 379 ||||||||||||||||| ||| Sbjct: 1337 gctgttccgatttgaggcctg 1357 >gnl|UG|Rn.9961 Rat transferrin receptor mRNA, 3' end /cds=(0,1869) /gb=M58040 /gi=207463 /len=3413 Length = 3413 Score = 46.1 bits (23), Expect = 1e-04 Identities = 23/23 (100%), Positives = 23/23 (100%) Query: 1 caggtcgactctagaggatcccc 23 ||||||||||||||||||||||| Sbjct: 2720 caggtcgactctagaggatcccc 2742 Score = 46.1 bits (23), Expect = 1e-04 Identities = 23/23 (100%), Positives = 23/23 (100%) Query: 1 caggtcgactctagaggatcccc 23 ||||||||||||||||||||||| Sbjct: 2665 caggtcgactctagaggatcccc 2643 >gnl|UG|Rn.33299 UI-R-C0-jh-e-10-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C0-jh-e-10-0-UI /clone_end=3' /gb=AI030620 /gi=3248446 /len=431 Length = 431 Score = 34.2 bits (17), Expect = 0.49 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 193 tttttaaagattttatt 209 ||||||||||||||||| Sbjct: 77 tttttaaagattttatt 61 >gnl|UG|Rn.29975 Rattus norvegicus integrin alpha E2 mRNA, partial cds /cds=(0,3504) /gb=AF020046 /gi=3236343 /len=3784 Length = 3784 Score = 34.2 bits (17), Expect = 0.49 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 7 gactctagaggatcccc 23 ||||||||||||||||| Sbjct: 3754 gactctagaggatcccc 3738 >gnl|UG|Rn.6831 EST194646 Rattus norvegicus cDNA, 3' end /clone=RSPAN80 /clone_end=3' /gb=AA851877 /gi=2939417 /len=503 Length = 503 Score = 34.2 bits (17), Expect = 0.49 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 193 tttttaaagattttatt 209 ||||||||||||||||| Sbjct: 3 tttttaaagattttatt 19 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4346 Number of Sequences: 23003 Number of extensions: 4346 Number of successful extensions: 406 Number of sequences better than 10: 15 length of query: 644 length of database: 15818664 effective HSP length: 17 effective length of query: 627 effective length of database: 15427613 effective search space: 9673113351 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)