BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D16Rat16 (641 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.32813 UI-R-E1-fb-g-11-0-UI.s1 Rattus norvegicus cDNA,... 228 2e-59 gnl|UG|Rn.34071 UI-R-A0-at-h-12-0-UI.s1 Rattus norvegicus cDNA,... 192 9e-49 gnl|UG|Rn.25028 EST228284 Rattus norvegicus cDNA, 3' end /clone... 190 4e-48 gnl|UG|Rn.33959 EST210583 Rattus norvegicus cDNA, 3' end /clone... 190 4e-48 gnl|UG|Rn.22270 EST213245 Rattus norvegicus cDNA, 3' end /clone... 190 4e-48 >gnl|UG|Rn.32813 UI-R-E1-fb-g-11-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E1-fb-g-11-0-UI /clone_end=3' /gb=AA956000 /gi=3119695 /len=392 Length = 392 Score = 228 bits (115), Expect = 2e-59 Identities = 130/135 (96%), Positives = 130/135 (96%) Query: 18 cttcagacacaccagaagagggcatcagatcccattatagatggttgtgagccaccatgt 77 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 66 cttcagatacaccagaagagggcatcagatcccattacagatggttgtgagccaccatgt 125 Query: 78 gggtgctgggatttgaactcaggacctctggaagagtagtcgggtgctcttaactgctga 137 || |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 126 ggttgctgggaattgaactcaggacctctggaagagcagtcgggtgctcttaactgctga 185 Query: 138 gccatctctccagcc 152 ||||||||||||||| Sbjct: 186 gccatctctccagcc 200 >gnl|UG|Rn.34071 UI-R-A0-at-h-12-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-A0-at-h-12-0-UI /clone_end=3' /gb=AA818403 /gi=2889142 /len=574 Length = 574 Score = 192 bits (97), Expect = 9e-49 Identities = 127/137 (92%), Positives = 127/137 (92%) Query: 18 cttcagacacaccagaagagggcatcagatcccattatagatggttgtgagccaccatgt 77 |||||||||||||||||||||||||| |||| | ||| |||||||||||||||||||||| Sbjct: 48 cttcagacacaccagaagagggcatcggatctctttacagatggttgtgagccaccatgt 107 Query: 78 gggtgctgggatttgaactcaggacctctggaagagtagtcgggtgctcttaactgctga 137 || |||||||| ||||||||| |||||||| ||||| ||||||||||||||||| ||||| Sbjct: 108 ggttgctgggaattgaactcatgacctctgaaagagcagtcgggtgctcttaaccgctga 167 Query: 138 gccatctctccagccca 154 ||||||||||||||||| Sbjct: 168 gccatctctccagccca 184 >gnl|UG|Rn.25028 EST228284 Rattus norvegicus cDNA, 3' end /clone=REMDM50 /clone_end=3' /gb=AI231596 /gi=3815476 /len=606 Length = 606 Score = 190 bits (96), Expect = 4e-48 Identities = 126/136 (92%), Positives = 126/136 (92%) Query: 18 cttcagacacaccagaagagggcatcagatcccattatagatggttgtgagccaccatgt 77 ||||||| ||||||||||||||||| |||| | ||| |||||||||||||||||||||| Sbjct: 44 cttcagatacaccagaagagggcattggatctctttacagatggttgtgagccaccatgt 103 Query: 78 gggtgctgggatttgaactcaggacctctggaagagtagtcgggtgctcttaactgctga 137 || |||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 104 ggttgctgggaattgaactcaggacctctggaagagcagtcgggtgctcttaaccgctga 163 Query: 138 gccatctctccagccc 153 |||||||||||||||| Sbjct: 164 gccatctctccagccc 179 >gnl|UG|Rn.33959 EST210583 Rattus norvegicus cDNA, 3' end /clone=RBRBK89 /clone_end=3' /gb=AI101294 /gi=3706218 /len=483 Length = 483 Score = 190 bits (96), Expect = 4e-48 Identities = 126/136 (92%), Positives = 126/136 (92%) Query: 18 cttcagacacaccagaagagggcatcagatcccattatagatggttgtgagccaccatgt 77 ||||||| |||||||||||||||||| |||| | ||| |||||| ||||||||||||||| Sbjct: 42 cttcagatacaccagaagagggcatcggatctctttacagatggctgtgagccaccatgt 101 Query: 78 gggtgctgggatttgaactcaggacctctggaagagtagtcgggtgctcttaactgctga 137 || |||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 102 ggttgctgggaattgaactcaggacctctggaagagtagtcaggtgctcttaaccgctga 161 Query: 138 gccatctctccagccc 153 |||||||||||||||| Sbjct: 162 gccatctctccagccc 177 >gnl|UG|Rn.22270 EST213245 Rattus norvegicus cDNA, 3' end /clone=RHEBV57 /clone_end=3' /gb=AI103956 /gi=3708418 /len=610 Length = 610 Score = 190 bits (96), Expect = 4e-48 Identities = 126/136 (92%), Positives = 126/136 (92%) Query: 18 cttcagacacaccagaagagggcatcagatcccattatagatggttgtgagccaccatgt 77 ||||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||| Sbjct: 66 cttcagatacaccagaagaaggcatcagatctcattacagatggttgtgagccaccatgt 125 Query: 78 gggtgctgggatttgaactcaggacctctggaagagtagtcgggtgctcttaactgctga 137 || |||||||| |||||||||||||||||||||||| ||| ||||||||||||| |||| Sbjct: 126 ggttgctgggaattgaactcaggacctctggaagagcagttgggtgctcttaaccactga 185 Query: 138 gccatctctccagccc 153 |||||||||||||||| Sbjct: 186 gccatctctccagccc 201 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5662 Number of Sequences: 23003 Number of extensions: 5662 Number of successful extensions: 1024 Number of sequences better than 10: 336 length of query: 641 length of database: 15818664 effective HSP length: 17 effective length of query: 624 effective length of database: 15427613 effective search space: 9626830512 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)