BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 881f03 (347 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.2309 Hyaluronan mediated motility receptor (RHAMM) /c... 168 7e-42 gnl|UG|Mm.25904 AU015255 Mus musculus cDNA, 3' end /clone=J0709... 143 4e-34 gnl|UG|Mm.26048 AU015678 Mus musculus cDNA, 3' end /clone=J0715... 143 4e-34 gnl|UG|Mm.26312 AU022328 Mus musculus cDNA, 3' end /clone=J0412... 141 2e-33 gnl|UG|Mm.19683 AU023567 Mus musculus cDNA, 3' end /clone=J0434... 135 1e-31 >gnl|UG|Mm.2309 Hyaluronan mediated motility receptor (RHAMM) /cds=(63,2447) /gb=AF031932 /gi=3025338 /len=3539 Length = 3539 Score = 168 bits (85), Expect = 7e-42 Identities = 145/165 (87%), Positives = 145/165 (87%) Query: 25 gcccattgtggatggtgccgtccctgggctggtggtcctgggttctataaaagagcaagc 84 |||| |||||| |||||| ||| || ||||||| | | |||||||| ||| | ||||||| Sbjct: 2881 gccccttgtggttggtgctgtctctaggctggtagacttgggttctgtaagaaagcaagc 2822 Query: 85 tgagcaagccagaggaagcaagccagtaagtaatgtccttttatggcctgtgcatcagct 144 |||||||||||| ||||||||||||||||| ||||||| | ||||||| |||||||||| Sbjct: 2821 tgagcaagccaggggaagcaagccagtaaggaatgtccctccatggcctctgcatcagct 2762 Query: 145 cctgcttcctgacctgctagagttccagttctgacttcctttggt 189 ||| |||||||||||||| |||||||||| ||||||||||||||| Sbjct: 2761 cctacttcctgacctgcttgagttccagtcctgacttcctttggt 2717 >gnl|UG|Mm.25904 AU015255 Mus musculus cDNA, 3' end /clone=J0709F08 /clone_end=3' /gb=AU015255 /gi=3370046 /len=451 Length = 451 Score = 143 bits (72), Expect = 4e-34 Identities = 120/136 (88%), Positives = 120/136 (88%) Query: 48 ctgggctggtggtcctgggttctataaaagagcaagctgagcaagccagaggaagcaagc 107 |||||||||| ||| | |||||||||| |||||||||||||||||||||| || |||||| Sbjct: 189 ctgggctggtagtcttaggttctataagagagcaagctgagcaagccagatgaggcaagc 130 Query: 108 cagtaagtaatgtccttttatggcctgtgcatcagctcctgcttcctgacctgctagagt 167 |||||| ||| ||| | ||||||| |||||||||||||||||||||||||||| |||| Sbjct: 129 cagtaaagaatatccctccatggcctctgcatcagctcctgcttcctgacctgcttgagt 70 Query: 168 tccagttctgacttcc 183 |||||| ||| ||||| Sbjct: 69 tccagtcctggcttcc 54 >gnl|UG|Mm.26048 AU015678 Mus musculus cDNA, 3' end /clone=J0715A05 /clone_end=3' /gb=AU015678 /gi=3370469 /len=591 Length = 591 Score = 143 bits (72), Expect = 4e-34 Identities = 120/136 (88%), Positives = 120/136 (88%) Query: 48 ctgggctggtggtcctgggttctataaaagagcaagctgagcaagccagaggaagcaagc 107 |||||||||| ||| | |||||||||| |||||||||||||||||||||| || |||||| Sbjct: 189 ctgggctggtagtcttaggttctataagagagcaagctgagcaagccagatgaggcaagc 130 Query: 108 cagtaagtaatgtccttttatggcctgtgcatcagctcctgcttcctgacctgctagagt 167 |||||| ||| ||| | ||||||| |||||||||||||||||||||||||||| |||| Sbjct: 129 cagtaaagaatatccctccatggcctctgcatcagctcctgcttcctgacctgcttgagt 70 Query: 168 tccagttctgacttcc 183 |||||| ||| ||||| Sbjct: 69 tccagtcctggcttcc 54 >gnl|UG|Mm.26312 AU022328 Mus musculus cDNA, 3' end /clone=J0412E02 /clone_end=3' /gb=AU022328 /gi=3387287 /len=574 Length = 574 Score = 141 bits (71), Expect = 2e-33 Identities = 124/142 (87%), Positives = 124/142 (87%) Query: 48 ctgggctggtggtcctgggttctataaaagagcaagctgagcaagccagaggaagcaagc 107 |||||||||| ||| |||||| ||||| |||||| |||||||||||||| |||||||||| Sbjct: 190 ctgggctggtagtcttgggttttataagagagcaggctgagcaagccaggggaagcaagc 131 Query: 108 cagtaagtaatgtccttttatggcctgtgcatcagctcctgcttcctgacctgctagagt 167 |||||| || ||| | ||||| | |||||||||||||||| ||||||||||| |||| Sbjct: 130 cagtaaagaacatccctccatggcntctgcatcagctcctgctccctgacctgcttgagt 71 Query: 168 tccagttctgacttcctttggt 189 |||||| ||||||||||||||| Sbjct: 70 tccagtcctgacttcctttggt 49 >gnl|UG|Mm.19683 AU023567 Mus musculus cDNA, 3' end /clone=J0434G07 /clone_end=3' /gb=AU023567 /gi=3393914 /len=559 Length = 559 Score = 135 bits (68), Expect = 1e-31 Identities = 120/138 (86%), Positives = 120/138 (86%) Query: 48 ctgggctggtggtcctgggttctataaaagagcaagctgagcaagccagaggaagcaagc 107 |||||||||| ||| |||||||||||| |||||| |||||||| |||| ||||||||| Sbjct: 189 ctgggctggtagtcttgggttctataagagagcannctgagcaatccaggtgaagcaagc 130 Query: 108 cagtaagtaatgtccttttatggcctgtgcatcagctcctgcttcctgacctgctagagt 167 |||||| || ||| | |||||||||||||||||||||||||||||||||||| |||| Sbjct: 129 cagtaaagaacatccctccatggcctgtgcatcagctcctgcttcctgacctgcttgagt 70 Query: 168 tccagttctgacttcctt 185 |||||| ||| ||||||| Sbjct: 69 tccagtcctggcttcctt 52 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3081 Number of Sequences: 15275 Number of extensions: 3081 Number of successful extensions: 948 Number of sequences better than 10: 85 length of query: 347 length of database: 15836343 effective HSP length: 16 effective length of query: 331 effective length of database: 15591943 effective search space: 5160933133 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)