BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 776c04 (266 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.12270 AU045746 Mus musculus cDNA, 3' end /clone=J0940... 68 1e-11 gnl|UG|Mm.17841 AU045821 Mus musculus cDNA, 3' end /clone=J0942... 58 1e-08 gnl|UG|Mm.23093 mc61e10.x1 Mus musculus cDNA, 3' end /clone=IMA... 32 0.78 gnl|UG|Mm.7051 M.musculus mRNA for radixin /cds=(165,1916) /gb=... 32 0.78 gnl|UG|Mm.12265 AU022376 Mus musculus cDNA, 3' end /clone=J0413... 32 0.78 >gnl|UG|Mm.12270 AU045746 Mus musculus cDNA, 3' end /clone=J0940F11 /clone_end=3' /gb=AU045746 /gi=3981929 /len=454 Length = 454 Score = 67.9 bits (34), Expect = 1e-11 Identities = 55/62 (88%), Positives = 55/62 (88%) Query: 19 accagagaactcctaaacctgataaacaacttcagcaaagtggctgggtataaaattaac 78 |||||||||||||||||||||||||||| |||| | |||| ||||| |||||||| ||| Sbjct: 62 accagagaactcctaaacctgataaacagcttcggtgaagtagctggatataaaataaac 3 Query: 79 tc 80 || Sbjct: 2 tc 1 >gnl|UG|Mm.17841 AU045821 Mus musculus cDNA, 3' end /clone=J0942C06 /clone_end=3' /gb=AU045821 /gi=3982004 /len=512 Length = 512 Score = 58.0 bits (29), Expect = 1e-08 Identities = 54/61 (88%), Positives = 54/61 (88%), Gaps = 1/61 (1%) Query: 23 gagaactcctaaacctgataaacaacttcagcaa-agtggctgggtataaaattaactca 81 |||||| |||||| |||||||||| ||||||| | ||| ||||| ||||||||||||||| Sbjct: 437 gagaacacctaaatctgataaacagcttcagccacagtagctggatataaaattaactca 378 Query: 82 a 82 | Sbjct: 377 a 377 >gnl|UG|Mm.23093 mc61e10.x1 Mus musculus cDNA, 3' end /clone=IMAGE:353034 /clone_end=3' /gb=AI415630 /len=378 Length = 378 Score = 32.2 bits (16), Expect = 0.78 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 68 ataaaattaactcaag 83 |||||||||||||||| Sbjct: 218 ataaaattaactcaag 203 >gnl|UG|Mm.7051 M.musculus mRNA for radixin /cds=(165,1916) /gb=X60672 /gi=1033049 /len=4203 Length = 4203 Score = 32.2 bits (16), Expect = 0.78 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 221 ttcaaggttaaccagt 236 |||||||||||||||| Sbjct: 3633 ttcaaggttaaccagt 3618 >gnl|UG|Mm.12265 AU022376 Mus musculus cDNA, 3' end /clone=J0413B08 /clone_end=3' /gb=AU022376 /gi=3387335 /len=583 Length = 583 Score = 32.2 bits (16), Expect = 0.78 Identities = 19/20 (95%), Positives = 19/20 (95%) Query: 83 gttgattctttattattatt 102 ||||||| |||||||||||| Sbjct: 53 gttgattatttattattatt 34 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1708 Number of Sequences: 15275 Number of extensions: 1708 Number of successful extensions: 460 Number of sequences better than 10: 17 length of query: 266 length of database: 15836343 effective HSP length: 16 effective length of query: 250 effective length of database: 15591943 effective search space: 3897985750 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)