BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 776b05 (387 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.25578 vr96g01.r1 Mus musculus cDNA, 5' end /clone=IMA... 101 2e-21 gnl|UG|Mm.23183 mm50f04.x1 Mus musculus cDNA, 3' end /clone=IMA... 70 5e-12 gnl|UG|Mm.16923 C80312 Mus musculus cDNA, 3' end /clone=J0079E1... 68 2e-11 gnl|UG|Mm.25982 AU016422 Mus musculus cDNA, 3' end /clone=J0724... 68 2e-11 gnl|UG|Mm.20234 va59f10.r1 Mus musculus cDNA, 5' end /clone=IMA... 58 2e-08 >gnl|UG|Mm.25578 vr96g01.r1 Mus musculus cDNA, 5' end /clone=IMAGE:1136592 /clone_end=5' /gb=AA793777 /gi=2856732 /len=350 Length = 350 Score = 101 bits (51), Expect = 2e-21 Identities = 109/127 (85%), Positives = 109/127 (85%), Gaps = 1/127 (0%) Query: 90 gccaggcagtggaggtgcacacctttaatctcaggactcaggaggcagatgccagccaat 149 |||||||||||| |||||||||||||| || ||| |||| ||||||||| || || ||| Sbjct: 144 gccaggcagtggtggtgcacacctttagtcccagcactcgggaggcagaagcaggcgaat 203 Query: 150 ttcttagttcaagactaccctggtttacagagtaagttccaggacagtca-ggctacaca 208 |||| |||||||| | | |||||| |||||||| |||| |||||||| || ||||||||| Sbjct: 204 ttctgagttcaaggccagcctggtctacagagtgagtttcaggacagccagggctacaca 263 Query: 209 gagaaac 215 ||||||| Sbjct: 264 gagaaac 270 >gnl|UG|Mm.23183 mm50f04.x1 Mus musculus cDNA, 3' end /clone=IMAGE:524959 /clone_end=3' /gb=AI426398 /len=432 Length = 432 Score = 69.9 bits (35), Expect = 5e-12 Identities = 89/107 (83%), Positives = 89/107 (83%) Query: 90 gccaggcagtggaggtgcacacctttaatctcaggactcaggaggcagatgccagccaat 149 |||||||||||| || |||| ||||||||| ||| |||| ||||||||| || | || Sbjct: 143 gccaggcagtggtggcgcacgcctttaatcccagcactcgggaggcagaggcaggtggat 84 Query: 150 ttcttagttcaagactaccctggtttacagagtaagttccaggacag 196 |||| ||||| || | | |||||| |||||||||||||||||||||| Sbjct: 83 ttctgagttcgaggccagcctggtctacagagtaagttccaggacag 37 >gnl|UG|Mm.16923 C80312 Mus musculus cDNA, 3' end /clone=J0079E12 /clone_end=3' /gb=C80312 /gi=2520642 /len=601 Length = 601 Score = 67.9 bits (34), Expect = 2e-11 Identities = 92/110 (83%), Positives = 92/110 (83%), Gaps = 1/110 (0%) Query: 107 cacacctttaatctcaggactcaggaggcagatgccagccaatttcttagttcaagacta 166 ||||||||||||| ||| |||| ||||||||| || || || ||| ||||| || | | Sbjct: 118 cacacctttaatcccagcactcgggaggcagaggcaggcggatctctgagttcgaggcca 59 Query: 167 ccctggtttacagagtaagttccaggacagtc-aggctacacagagaaac 215 |||||| |||||||| ||||||||||||| | ||||||||||||||||| Sbjct: 58 gcctggtctacagagttagttccaggacagccaaggctacacagagaaac 9 >gnl|UG|Mm.25982 AU016422 Mus musculus cDNA, 3' end /clone=J0724H03 /clone_end=3' /gb=AU016422 /gi=3371426 /len=605 Length = 605 Score = 67.9 bits (34), Expect = 2e-11 Identities = 92/110 (83%), Positives = 92/110 (83%), Gaps = 1/110 (0%) Query: 107 cacacctttaatctcaggactcaggaggcagatgccagccaatttcttagttcaagacta 166 ||||||||||||| ||| |||||||||||||| || | |||||| |||| || ||| Sbjct: 234 cacacctttaatcccagcactcaggaggcagaggcaggtggatttctgagttggaggcta 175 Query: 167 ccctggtttacagagtaagttccaggacagtca-ggctacacagagaaac 215 |||||| |||| ||| ||||||||||||| || |||||||||||||||| Sbjct: 174 gcctggtctacaaagtgagttccaggacagccagggctacacagagaaac 125 >gnl|UG|Mm.20234 va59f10.r1 Mus musculus cDNA, 5' end /clone=IMAGE:735691 /clone_end=5' /gb=AA270248 /gi=1908578 /len=536 Length = 536 Score = 58.0 bits (29), Expect = 2e-08 Identities = 45/49 (91%), Positives = 45/49 (91%), Gaps = 1/49 (2%) Query: 168 cctggtttacagagtaagttccaggacagtca-ggctacacagagaaac 215 |||||| |||||||| ||||||||||||| || |||||||||||||||| Sbjct: 392 cctggtctacagagtgagttccaggacagccagggctacacagagaaac 344 Score = 40.1 bits (20), Expect = 0.005 Identities = 26/28 (92%), Positives = 26/28 (92%) Query: 111 cctttaatctcaggactcaggaggcaga 138 ||||||||| ||| |||||||||||||| Sbjct: 426 cctttaatcccagcactcaggaggcaga 399 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3135 Number of Sequences: 15275 Number of extensions: 3135 Number of successful extensions: 1273 Number of sequences better than 10: 323 length of query: 387 length of database: 15836343 effective HSP length: 16 effective length of query: 371 effective length of database: 15591943 effective search space: 5784610853 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)