BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 755c09 (278 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.5491 C76428 Mus musculus cDNA, 3' end /clone=J0010E03... 62 9e-10 gnl|UG|Mm.4287 vh78a12.r1 Mus musculus cDNA, 3' end /clone=IMAG... 44 2e-04 gnl|UG|Mm.17721 AU045847 Mus musculus cDNA, 3' end /clone=J0942... 36 0.053 gnl|UG|Mm.6840 M.musculus ASF mRNA /cds=UNKNOWN /gb=X66091 /gi=... 36 0.053 gnl|UG|Mm.25371 C85129 Mus musculus cDNA, 3' end /clone=J0202G0... 36 0.053 >gnl|UG|Mm.5491 C76428 Mus musculus cDNA, 3' end /clone=J0010E03 /clone_end=3' /gb=C76428 /gi=2516758 /len=587 Length = 587 Score = 61.9 bits (31), Expect = 9e-10 Identities = 54/62 (87%), Positives = 54/62 (87%) Query: 133 aggagaatacaagtaaacaggtaganacccttaaagaggaatcacataaatcccttaaag 192 ||||||| ||| ||||||||||||| |||||||||||||| |||| |||||| ||| || Sbjct: 177 aggagaacacaggtaaacaggtagaagcccttaaagaggaaacacaaaaatccattatag 118 Query: 193 aa 194 || Sbjct: 117 aa 116 >gnl|UG|Mm.4287 vh78a12.r1 Mus musculus cDNA, 3' end /clone=IMAGE:893086 /clone_end=3' /gb=AA522008 /gi=2262753 /len=647 Length = 647 Score = 44.1 bits (22), Expect = 2e-04 Identities = 31/34 (91%), Positives = 31/34 (91%) Query: 160 cccttaaagaggaatcacataaatcccttaaaga 193 |||||||||| ||| |||| |||||||||||||| Sbjct: 532 cccttaaagatgaaacacaaaaatcccttaaaga 565 Score = 30.2 bits (15), Expect = 3.2 Identities = 18/19 (94%), Positives = 18/19 (94%) Query: 178 ataaatcccttaaagaaat 196 |||| |||||||||||||| Sbjct: 488 ataactcccttaaagaaat 506 >gnl|UG|Mm.17721 AU045847 Mus musculus cDNA, 3' end /clone=J0942G12 /clone_end=3' /gb=AU045847 /gi=3982030 /len=590 Length = 590 Score = 36.2 bits (18), Expect = 0.053 Identities = 35/41 (85%), Positives = 35/41 (85%) Query: 133 aggagaatacaagtaaacaggtaganacccttaaagaggaa 173 ||||||| ||| |||||||||||| ||||||||||||| Sbjct: 43 aggagaacacagctaaacaggtagaagaccttaaagaggaa 3 >gnl|UG|Mm.6840 M.musculus ASF mRNA /cds=UNKNOWN /gb=X66091 /gi=50027 /len=1584 Length = 1584 Score = 36.2 bits (18), Expect = 0.053 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 60 aagacacatganaagcaagat 80 ||||||||||| ||||||||| Sbjct: 1383 aagacacatgaaaagcaagat 1363 >gnl|UG|Mm.25371 C85129 Mus musculus cDNA, 3' end /clone=J0202G03 /clone_end=3' /gb=C85129 /gi=2917086 /len=590 Length = 590 Score = 36.2 bits (18), Expect = 0.053 Identities = 30/34 (88%), Positives = 30/34 (88%) Query: 163 ttaaagaggaatcacataaatcccttaaagaaat 196 |||||||| || || ||||||| ||||||||||| Sbjct: 103 ttaaagagaaaacaaataaatctcttaaagaaat 70 Score = 32.2 bits (16), Expect = 0.82 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 40 cagcaagccctggata 55 |||||||||||||||| Sbjct: 229 cagcaagccctggata 214 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1654 Number of Sequences: 15275 Number of extensions: 1654 Number of successful extensions: 401 Number of sequences better than 10: 13 length of query: 278 length of database: 15836343 effective HSP length: 16 effective length of query: 262 effective length of database: 15591943 effective search space: 4085089066 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)