BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 705f05 (233 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.7647 vt80d02.r1 Mus musculus cDNA, 5' end /clone=IMAG... 96 5e-20 gnl|UG|Mm.19312 uj37f11.x1 Mus musculus cDNA, 3' end /clone=IMA... 34 0.17 gnl|UG|Mm.4736 Mouse mRNA for unknown product, complete cds /cd... 34 0.17 gnl|UG|Mm.5014 Norrie disease homolog /cds=(431,826) /gb=X92397... 32 0.68 gnl|UG|Mm.22578 C78947 Mus musculus cDNA, 3' end /clone=J0057G0... 32 0.68 >gnl|UG|Mm.7647 vt80d02.r1 Mus musculus cDNA, 5' end /clone=IMAGE:1177443 /clone_end=5' /gb=AA790016 /gi=2850136 /len=412 Length = 412 Score = 95.6 bits (48), Expect = 5e-20 Identities = 69/76 (90%), Positives = 69/76 (90%) Query: 1 gatccttatttaactttggtacctggtatgtgtctagaaaattgtacatttcatccagat 60 |||||| ||||||||| |||||||||||| || ||||||||||| ||||| |||||||| Sbjct: 317 gatcctgatttaacttaggtacctggtatctgagtagaaaattgtccatttaatccagat 258 Query: 61 tttccagttttgttga 76 |||||||||||||||| Sbjct: 257 tttccagttttgttga 242 >gnl|UG|Mm.19312 uj37f11.x1 Mus musculus cDNA, 3' end /clone=IMAGE:1922157 /clone_end=3' /gb=AI315678 /len=526 Length = 526 Score = 34.2 bits (17), Expect = 0.17 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 8 atttaactttggtacctggta 28 ||||||||||||||| ||||| Sbjct: 74 atttaactttggtacatggta 94 >gnl|UG|Mm.4736 Mouse mRNA for unknown product, complete cds /cds=(308,5830) /gb=D29801 /gi=475015 /len=7222 Length = 7222 Score = 34.2 bits (17), Expect = 0.17 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 143 tgtatgtgtgaaagtgt 159 ||||||||||||||||| Sbjct: 7176 tgtatgtgtgaaagtgt 7160 >gnl|UG|Mm.5014 Norrie disease homolog /cds=(431,826) /gb=X92397 /gi=1177544 /len=1774 Length = 1774 Score = 32.2 bits (16), Expect = 0.68 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 141 tgtgtatgtgtgaaag 156 |||||||||||||||| Sbjct: 1488 tgtgtatgtgtgaaag 1473 >gnl|UG|Mm.22578 C78947 Mus musculus cDNA, 3' end /clone=J0057G08 /clone_end=3' /gb=C78947 /gi=2519277 /len=497 Length = 497 Score = 32.2 bits (16), Expect = 0.68 Identities = 22/24 (91%), Positives = 22/24 (91%) Query: 140 ctgtgtatgtgtgaaagtgtgtgt 163 ||||||||||||| | |||||||| Sbjct: 431 ctgtgtatgtgtgtatgtgtgtgt 408 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1863 Number of Sequences: 15275 Number of extensions: 1863 Number of successful extensions: 566 Number of sequences better than 10: 10 length of query: 233 length of database: 15836343 effective HSP length: 16 effective length of query: 217 effective length of database: 15591943 effective search space: 3383451631 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)