BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 601c05 (330 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.6259 Mus musculus kanadaptin mRNA, complete cds /cds=... 36 0.063 gnl|UG|Mm.26877 AU044722 Mus musculus cDNA, 3' end /clone=J0924... 36 0.063 gnl|UG|Mm.5763 C78885 Mus musculus cDNA, 3' end /clone=J0056G12... 34 0.25 gnl|UG|Mm.4989 Murine tlm oncogene for tlm protein /cds=(0,953)... 32 0.99 gnl|UG|Mm.4223 Pyruvate dehydrogenase E1alpha-like /cds=(607,17... 32 0.99 >gnl|UG|Mm.6259 Mus musculus kanadaptin mRNA, complete cds /cds=(534,2057) /gb=AF035526 /gi=2661089 /len=2313 Length = 2313 Score = 36.2 bits (18), Expect = 0.063 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 26 tgaggatgtgaagaaaga 43 |||||||||||||||||| Sbjct: 161 tgaggatgtgaagaaaga 178 >gnl|UG|Mm.26877 AU044722 Mus musculus cDNA, 3' end /clone=J0924B10 /clone_end=3' /gb=AU044722 /gi=3980905 /len=569 Length = 569 Score = 36.2 bits (18), Expect = 0.063 Identities = 24/26 (92%), Positives = 24/26 (92%) Query: 98 tcagtcaggaggttcctcagaaaatt 123 |||||| || |||||||||||||||| Sbjct: 543 tcagtctggcggttcctcagaaaatt 568 >gnl|UG|Mm.5763 C78885 Mus musculus cDNA, 3' end /clone=J0056G12 /clone_end=3' /gb=C78885 /gi=2519215 /len=597 Length = 597 Score = 34.2 bits (17), Expect = 0.25 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 108 ggttcctcagaaaattg 124 ||||||||||||||||| Sbjct: 506 ggttcctcagaaaattg 522 >gnl|UG|Mm.4989 Murine tlm oncogene for tlm protein /cds=(0,953) /gb=X52634 /gi=53528 /len=1425 Length = 1425 Score = 32.2 bits (16), Expect = 0.99 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 109 gttcctcagaaaattg 124 |||||||||||||||| Sbjct: 693 gttcctcagaaaattg 678 >gnl|UG|Mm.4223 Pyruvate dehydrogenase E1alpha-like /cds=(607,1782) /gb=M76728 /gi=200278 /len=2349 Length = 2349 Score = 32.2 bits (16), Expect = 0.99 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 30 gatgtgaagaaagagg 45 |||||||||||||||| Sbjct: 1631 gatgtgaagaaagagg 1646 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2192 Number of Sequences: 15275 Number of extensions: 2192 Number of successful extensions: 580 Number of sequences better than 10: 13 length of query: 330 length of database: 15836343 effective HSP length: 16 effective length of query: 314 effective length of database: 15591943 effective search space: 4895870102 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)