BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 395h05 (351 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.6272 Mus musculus mcp-1 receptor mRNA, complete cds /... 94 3e-19 gnl|UG|Mm.6354 Mus musculus mRNA for mGpi1p, complete cds /cds=... 66 8e-11 gnl|UG|Mm.4405 C. elegans ceh-10 homeo domain containing homolo... 58 2e-08 gnl|UG|Mm.29413 mg93a12.r1 Mus musculus cDNA, 5' end /clone=IMA... 48 2e-05 gnl|UG|Mm.2927 Zinc finger protein 30 /cds=(143,1789) /gb=Z3017... 44 3e-04 >gnl|UG|Mm.6272 Mus musculus mcp-1 receptor mRNA, complete cds /cds=(133,1254) /gb=U56819 /gi=1532146 /len=2992 Length = 2992 Score = 93.7 bits (47), Expect = 3e-19 Identities = 107/126 (84%), Positives = 107/126 (84%), Gaps = 1/126 (0%) Query: 195 aaccttcttaatgctggcaccctttaatatagttcctcatgttgtgatgctcc-caaccg 253 ||||||| |||| ||| ||||||||||| |||||||||||||||| || || |||| Sbjct: 1541 aaccttcctaatcctgtgaccctttaatacagttcctcatgttgtggtgatctacaacaa 1482 Query: 254 taaaattatatttgttgccacttcttaactgtcattttgctactgttacgaattanaatg 313 ||||||||| |||| ||| ||||| || |||| ||||||||||||||| |||||| |||| Sbjct: 1481 taaaattatttttgctgctacttcatagctgtaattttgctactgttatgaattataatg 1422 Query: 314 taaata 319 |||||| Sbjct: 1421 taaata 1416 >gnl|UG|Mm.6354 Mus musculus mRNA for mGpi1p, complete cds /cds=(140,1885) /gb=AB008895 /gi=2641975 /len=3062 Length = 3062 Score = 65.9 bits (33), Expect = 8e-11 Identities = 48/53 (90%), Positives = 48/53 (90%) Query: 213 accctttaatatagttcctcatgttgtgatgctcccaaccgtaaaattatatt 265 ||||||||||| |||||||||||||||| || ||||||| |||||||||||| Sbjct: 2114 accctttaatacagttcctcatgttgtggtgaccccaaccataaaattatatt 2166 >gnl|UG|Mm.4405 C. elegans ceh-10 homeo domain containing homolog /cds=(0,1085) /gb=L34808 /gi=623165 /len=3089 Length = 3089 Score = 58.0 bits (29), Expect = 2e-08 Identities = 46/52 (88%), Positives = 46/52 (88%) Query: 268 ttgccacttcttaactgtcattttgctactgttacgaattanaatgtaaata 319 |||| ||||| ||||||| ||||||||||||||| |||| | |||||||||| Sbjct: 2135 ttgctacttcataactgtaattttgctactgttatgaatcaaaatgtaaata 2186 >gnl|UG|Mm.29413 mg93a12.r1 Mus musculus cDNA, 5' end /clone=IMAGE:440542 /clone_end=5' /gb=AA014754 /gi=1475689 /len=1128 Length = 1128 Score = 48.1 bits (24), Expect = 2e-05 Identities = 41/47 (87%), Positives = 41/47 (87%) Query: 273 acttcttaactgtcattttgctactgttacgaattanaatgtaaata 319 ||||| |||||||||||| ||| ||||||| ||| | |||||||||| Sbjct: 312 acttcataactgtcatttcgctcctgttacaaatcataatgtaaata 266 >gnl|UG|Mm.2927 Zinc finger protein 30 /cds=(143,1789) /gb=Z30174 /gi=456268 /len=2604 Length = 2604 Score = 44.1 bits (22), Expect = 3e-04 Identities = 31/34 (91%), Positives = 31/34 (91%) Query: 266 tgttgccacttcttaactgtcattttgctactgt 299 |||||| ||||| ||||||| ||||||||||||| Sbjct: 2328 tgttgctacttcataactgtaattttgctactgt 2295 Score = 40.1 bits (20), Expect = 0.004 Identities = 26/28 (92%), Positives = 26/28 (92%) Query: 213 accctttaatatagttcctcatgttgtg 240 ||||||||||| ||||||||||| |||| Sbjct: 2379 accctttaatacagttcctcatgctgtg 2352 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2266 Number of Sequences: 15275 Number of extensions: 2266 Number of successful extensions: 641 Number of sequences better than 10: 36 length of query: 351 length of database: 15836343 effective HSP length: 16 effective length of query: 335 effective length of database: 15591943 effective search space: 5223300905 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)