BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 344a09 (396 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.20328 mf73b03.r1 Mus musculus cDNA, 5' end /clone=IMA... 40 0.005 gnl|UG|Mm.3404 Mesenchyme homeobox 1 /cds=(304,1065) /gb=Z15103... 36 0.076 gnl|UG|Mm.22107 C87981 Mus musculus cDNA, 3' end /clone=J0254H1... 32 1.2 gnl|UG|Mm.8235 Mus musculus mRNA for LOK, complete cds /cds=(99... 30 4.7 >gnl|UG|Mm.20328 mf73b03.r1 Mus musculus cDNA, 5' end /clone=IMAGE:419885 /clone_end=5' /gb=W89373 /gi=1538944 /len=495 Length = 495 Score = 40.1 bits (20), Expect = 0.005 Identities = 20/20 (100%), Positives = 20/20 (100%) Query: 150 cgtcacctgcagctggccat 169 |||||||||||||||||||| Sbjct: 300 cgtcacctgcagctggccat 319 >gnl|UG|Mm.3404 Mesenchyme homeobox 1 /cds=(304,1065) /gb=Z15103 /gi=57939 /len=2156 Length = 2156 Score = 36.2 bits (18), Expect = 0.076 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 376 tgcctgaggctgttttcc 393 |||||||||||||||||| Sbjct: 1820 tgcctgaggctgttttcc 1803 >gnl|UG|Mm.22107 C87981 Mus musculus cDNA, 3' end /clone=J0254H10 /clone_end=3' /gb=C87981 /gi=2919938 /len=584 Length = 584 Score = 32.2 bits (16), Expect = 1.2 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 358 tgtgcatatgtatatg 373 |||||||||||||||| Sbjct: 128 tgtgcatatgtatatg 113 >gnl|UG|Mm.8235 Mus musculus mRNA for LOK, complete cds /cds=(99,2999) /gb=D89728 /gi=2723474 /len=5002 Length = 5002 Score = 30.2 bits (15), Expect = 4.7 Identities = 18/19 (94%), Positives = 18/19 (94%) Query: 154 acctgcagctggccatgag 172 ||||| ||||||||||||| Sbjct: 2210 acctggagctggccatgag 2228 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4579 Number of Sequences: 15275 Number of extensions: 4579 Number of successful extensions: 1204 Number of sequences better than 10: 42 length of query: 396 length of database: 15836343 effective HSP length: 16 effective length of query: 380 effective length of database: 15591943 effective search space: 5924938340 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)