BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 2525 (490 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.2581 Eph receptor A2 /cds=(96,3023) /gb=U07634 /gi=46... 264 2e-70 gnl|UG|Mm.2235 Mus musculus large ribosomal subunit protein mRN... 36 0.095 gnl|UG|Mm.5163 Mus musculus rin mRNA, complete cds /cds=(143,79... 34 0.38 gnl|UG|Mm.25976 mb91g08.r1 Mus musculus cDNA, 5' end /clone=IMA... 32 1.5 gnl|UG|Mm.8235 Mus musculus mRNA for LOK, complete cds /cds=(99... 32 1.5 >gnl|UG|Mm.2581 Eph receptor A2 /cds=(96,3023) /gb=U07634 /gi=467232 /len=3873 Length = 3873 Score = 264 bits (133), Expect = 2e-70 Identities = 153/160 (95%), Positives = 153/160 (95%) Query: 315 agcctgttctccaggattcttcaagtctgaggcatctgagagccnttgcctgcagtgtcc 374 |||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||| Sbjct: 918 agcctgttctccaggattcttcaagtctgaggcatctgagagcccttccctggagtgtcc 977 Query: 375 ggagcataccctgccatccactgagggtgccacctcctgccagtgtgaagaaggctattt 434 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 978 agagcataccctgccatccacagagggtgccacctcctgccagtgtgaagaaggctattt 1037 Query: 435 cagggcacctgaggacccactgtccatgccctgcacacgt 474 |||||||||||||||||||||||||||| | ||||||||| Sbjct: 1038 cagggcacctgaggacccactgtccatgtcttgcacacgt 1077 >gnl|UG|Mm.2235 Mus musculus large ribosomal subunit protein mRNA, complete cds /cds=(27,509) /gb=L08651 /gi=404765 /len=640 Length = 640 Score = 36.2 bits (18), Expect = 0.095 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 408 ctcctgccagtgtgaaga 425 |||||||||||||||||| Sbjct: 517 ctcctgccagtgtgaaga 534 >gnl|UG|Mm.5163 Mus musculus rin mRNA, complete cds /cds=(143,796) /gb=U71202 /gi=1655998 /len=1762 Length = 1762 Score = 34.2 bits (17), Expect = 0.38 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 292 tcctgtctctccttgtg 308 ||||||||||||||||| Sbjct: 817 tcctgtctctccttgtg 833 >gnl|UG|Mm.25976 mb91g08.r1 Mus musculus cDNA, 5' end /clone=IMAGE:336830 /clone_end=5' /gb=W20830 /gi=1297720 /len=1000 Length = 1000 Score = 32.2 bits (16), Expect = 1.5 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 297 tctctccttgtgcctc 312 |||||||||||||||| Sbjct: 829 tctctccttgtgcctc 814 >gnl|UG|Mm.8235 Mus musculus mRNA for LOK, complete cds /cds=(99,2999) /gb=D89728 /gi=2723474 /len=5002 Length = 5002 Score = 32.2 bits (16), Expect = 1.5 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 321 ttctccaggattcttc 336 |||||||||||||||| Sbjct: 1169 ttctccaggattcttc 1184 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3943 Number of Sequences: 15275 Number of extensions: 3943 Number of successful extensions: 1014 Number of sequences better than 10: 7 length of query: 490 length of database: 15836343 effective HSP length: 17 effective length of query: 473 effective length of database: 15576668 effective search space: 7367763964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)