BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 131g08 (303 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.6332 Arachidonate 15-lipoxygenase, second type /cds=(... 107 2e-23 gnl|UG|Mm.27452 mb19f03.x1 Mus musculus cDNA, 3' end /clone=IMA... 90 4e-18 gnl|UG|Mm.2992 Myelin basic protein /cds=(169,756) /gb=X67319 /... 90 4e-18 gnl|UG|Mm.20647 vp07d06.r1 Mus musculus cDNA, 5' end /clone=IMA... 90 4e-18 gnl|UG|Mm.20897 Mus musculus chloride channel CaCC mRNA, comple... 86 7e-17 >gnl|UG|Mm.6332 Arachidonate 15-lipoxygenase, second type /cds=(13,2046) /gb=Y14696 /gi=3036863 /len=3203 Length = 3203 Score = 107 bits (54), Expect = 2e-23 Identities = 62/65 (95%), Positives = 62/65 (95%) Query: 239 gggctggagagatggctcaacggttaagagcantgactgcttttccagagatcctgagtt 298 ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||| Sbjct: 2711 gggctggagagatggctcagcggttaagagcactgactgctcttccagagatcctgagtt 2770 Query: 299 caatt 303 ||||| Sbjct: 2771 caatt 2775 >gnl|UG|Mm.27452 mb19f03.x1 Mus musculus cDNA, 3' end /clone=IMAGE:329885 /clone_end=3' /gb=AI414458 /len=330 Length = 330 Score = 89.7 bits (45), Expect = 4e-18 Identities = 59/64 (92%), Positives = 59/64 (92%) Query: 240 ggctggagagatggctcaacggttaagagcantgactgcttttccagagatcctgagttc 299 ||||||||| |||||||| |||||||||||| |||||||| |||||||| |||||||||| Sbjct: 198 ggctggagaaatggctcagcggttaagagcactgactgctcttccagaggtcctgagttc 139 Query: 300 aatt 303 |||| Sbjct: 138 aatt 135 >gnl|UG|Mm.2992 Myelin basic protein /cds=(169,756) /gb=X67319 /gi=51332 /len=4670 Length = 4670 Score = 89.7 bits (45), Expect = 4e-18 Identities = 59/64 (92%), Positives = 59/64 (92%) Query: 240 ggctggagagatggctcaacggttaagagcantgactgcttttccagagatcctgagttc 299 |||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||| Sbjct: 2959 ggctggagagatggctcagtggttaagagcactgactgctcttccagaggtcctgagttc 3018 Query: 300 aatt 303 |||| Sbjct: 3019 aatt 3022 >gnl|UG|Mm.20647 vp07d06.r1 Mus musculus cDNA, 5' end /clone=IMAGE:1067915 /clone_end=5' /gb=AA672729 /gi=2644946 /len=652 Length = 652 Score = 89.7 bits (45), Expect = 4e-18 Identities = 59/64 (92%), Positives = 59/64 (92%) Query: 240 ggctggagagatggctcaacggttaagagcantgactgcttttccagagatcctgagttc 299 |||||||||||||||||| | |||||||||| |||||||| |||||||| |||||||||| Sbjct: 573 ggctggagagatggctcagcagttaagagcactgactgctcttccagaggtcctgagttc 632 Query: 300 aatt 303 |||| Sbjct: 633 aatt 636 >gnl|UG|Mm.20897 Mus musculus chloride channel CaCC mRNA, complete cds /cds=(46,2751) /gb=AF052746 /gi=3560546 /len=3446 Length = 3446 Score = 85.7 bits (43), Expect = 7e-17 Identities = 60/66 (90%), Positives = 60/66 (90%) Query: 238 agggctggagagatggctcaacggttaagagcantgactgcttttccagagatcctgagt 297 ||||||| |||||||||||| ||||||||||| |||||||| |||||||| |||||||| Sbjct: 3174 agggctgaagagatggctcagtggttaagagcactgactgctcttccagaggtcctgagt 3233 Query: 298 tcaatt 303 |||||| Sbjct: 3234 tcaatt 3239 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2573 Number of Sequences: 15275 Number of extensions: 2573 Number of successful extensions: 999 Number of sequences better than 10: 278 length of query: 303 length of database: 15836343 effective HSP length: 16 effective length of query: 287 effective length of database: 15591943 effective search space: 4474887641 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)