BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 086h07 (375 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.25058 C80007 Mus musculus cDNA, 3' end /clone=J0075B0... 197 2e-50 gnl|UG|Mm.27355 mw23e12.r1 Mus musculus cDNA, 5' end /clone=IMA... 147 2e-35 gnl|UG|Mm.19590 AU015722 Mus musculus cDNA, 3' end /clone=J0715... 141 1e-33 gnl|UG|Mm.27511 mp01f12.x1 Mus musculus cDNA, 3' end /clone=IMA... 139 5e-33 gnl|UG|Mm.25056 C79741 Mus musculus cDNA, 3' end /clone=J0071C0... 113 3e-25 >gnl|UG|Mm.25058 C80007 Mus musculus cDNA, 3' end /clone=J0075B08 /clone_end=3' /gb=C80007 /gi=2520337 /len=570 Length = 570 Score = 197 bits (99), Expect = 2e-50 Identities = 153/169 (90%), Positives = 153/169 (90%), Gaps = 4/169 (2%) Query: 199 ctgtactggctggctttgtgtgtcaacttgacacaagctgaagttatcacagagaaagga 258 ||||||||||||| |||| ||||||||||||||||||||| |||||||||| |||||||| Sbjct: 196 ctgtactggctggttttgcgtgtcaacttgacacaagctggagttatcacacagaaagga 255 Query: 259 gcctcagttgaggaaatgcctccacgagacccagctgtaaggcatttgctcaattagt-a 317 ||||| ||||||||||||||||| |||| ||||||| ||||||||| |||||||||| | Sbjct: 256 gcctcccttgaggaaatgcctccatgagatccagctgcaaggcattttctcaattagtga 315 Query: 318 tcaaggggggaggagggcccagcccattgtgggtggtgccatccctggg 366 |||||||| |||||||||| ||| ||||||||||||||||||||||| Sbjct: 316 tcaagggg---ggagggcccaaccctttgtgggtggtgccatccctggg 361 >gnl|UG|Mm.27355 mw23e12.r1 Mus musculus cDNA, 5' end /clone=IMAGE:671566 /clone_end=5' /gb=AA241986 /gi=1872574 /len=527 Length = 527 Score = 147 bits (74), Expect = 2e-35 Identities = 114/126 (90%), Positives = 114/126 (90%), Gaps = 1/126 (0%) Query: 202 tactggctggctttgtgtgtcaacttgacacaagctgaagttatcacagagaaaggagcc 261 |||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct: 311 tactggctggttttgtgtgtcaacttgacacaggctggagttatcacagagaaaggagct 370 Query: 262 tcagttgaggaaatgcctccacgagacccagctgtaaggcatttgctcaattagt-atca 320 ||||||| | || ||||| || |||| ||||||||||||||||| |||||||||| |||| Sbjct: 371 tcagttgggaaagtgccttcatgagatccagctgtaaggcattttctcaattagtgatca 430 Query: 321 aggggg 326 |||||| Sbjct: 431 aggggg 436 >gnl|UG|Mm.19590 AU015722 Mus musculus cDNA, 3' end /clone=J0715E08 /clone_end=3' /gb=AU015722 /gi=3370513 /len=554 Length = 554 Score = 30.3 bits (15), Expect = 4.3 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 219 tgtcaacttgacaca 233 ||||||||||||||| Sbjct: 336 tgtcaacttgacaca 350 Score = 141 bits (71), Expect = 1e-33 Identities = 103/111 (92%), Positives = 103/111 (92%), Gaps = 2/111 (1%) Query: 217 tgtgtcaacttgacacaagctgaagttatcacagagaaaggagcctcagttgaggaaatg 276 ||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| Sbjct: 311 tgtgtcaacttgacaca-gctggagttatcacagagaaaggagcttcagttgaggaaatg 253 Query: 277 cctccacgagacccagctgtaaggcatttgctcaattagt-atcaaggggg 326 |||||| |||| ||| ||||||||||||| |||||||||| |||||||||| Sbjct: 252 cctccatgagatccaactgtaaggcattttctcaattagtgatcaaggggg 202 Score = 30.3 bits (15), Expect = 4.3 Identities = 18/19 (94%), Positives = 18/19 (94%) Query: 213 tttgtgtgtcaacttgaca 231 |||||||||||| |||||| Sbjct: 354 tttgtgtgtcaagttgaca 336 >gnl|UG|Mm.27511 mp01f12.x1 Mus musculus cDNA, 3' end /clone=IMAGE:567983 /clone_end=3' /gb=AI428315 /len=551 Length = 551 Score = 139 bits (70), Expect = 5e-33 Identities = 102/110 (92%), Positives = 102/110 (92%), Gaps = 2/110 (1%) Query: 217 tgtgtcaacttgacacaagctgaagttatcacagagaaaggagcctcagttgaggaaatg 276 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct: 289 tgtgtcaacttgacacaagctgaagttatcacagagaaaggagcttcagttga-gaaatg 231 Query: 277 cctccacgagacccagctgtaaggcatttgctcaattagt-atcaagggg 325 |||||| |||| |||| |||||| ||||| |||||||||| ||||||||| Sbjct: 230 cctccatgagatccagatgtaagacattttctcaattagtgatcaagggg 181 >gnl|UG|Mm.25056 C79741 Mus musculus cDNA, 3' end /clone=J0071C05 /clone_end=3' /gb=C79741 /gi=2520071 /len=603 Length = 603 Score = 113 bits (57), Expect = 3e-25 Identities = 115/131 (87%), Positives = 115/131 (87%), Gaps = 4/131 (3%) Query: 200 tgtactggctggctttgtgtgtcaacttgacacaagctgaagttatcacagagaaaggag 259 |||||||||||| ||||| | | |||||||||| |||| |||||||||||||||||||| Sbjct: 387 tgtactggctggttttgttt--ccacttgacacaggctggagttatcacagagaaaggag 444 Query: 260 cctcagttgaggaaatgcctccacgagacccagctgtaaggcatttgctcaattagt-at 318 | |||||| |||||||||||||| |||| | ||||||| |||||| |||||||||| || Sbjct: 445 cttcagttaaggaaatgcctcca-gagatctggctgtaangcattttctcaattagtgat 503 Query: 319 caaggggggag 329 ||||||||||| Sbjct: 504 caaggggggag 514 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.38 0.711 1.31 Gapped Lambda K H 1.38 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3913 Number of Sequences: 15275 Number of extensions: 3913 Number of successful extensions: 1208 Number of sequences better than 10: 79 length of query: 375 length of database: 15836343 effective HSP length: 16 effective length of query: 359 effective length of database: 15591943 effective search space: 5597507537 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.7 bits) S1: 0 ( 0.5 bits) S2: 15 (30.3 bits)