BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 080g11 (543 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.17782 AU044215 Mus musculus cDNA, 3' end /clone=J0916... 76 1e-13 gnl|UG|Mm.17841 AU045821 Mus musculus cDNA, 3' end /clone=J0942... 44 4e-04 gnl|UG|Mm.21754 Synaptonemal complex protein 3 /cds=(88,852) /g... 36 0.11 gnl|UG|Mm.10299 Mouse procollagen type V alpha 2 (Col5a-2) mRNA... 36 0.11 >gnl|UG|Mm.17782 AU044215 Mus musculus cDNA, 3' end /clone=J0916F09 /clone_end=3' /gb=AU044215 /gi=3979750 /len=341 Length = 341 Score = 75.8 bits (38), Expect = 1e-13 Identities = 83/98 (84%), Positives = 83/98 (84%) Query: 444 cacaacagccacaaatactataaaatatcttgctgtaattttaagtaactgaaaggcctg 503 ||||| || |||||||| |||||||||||||| ||| | | |||| || |||||| ||| Sbjct: 270 cacaatagtcacaaataatataaaatatcttggtgtgactctaaggaagtgaaagatctg 211 Query: 504 tatgacaaggacttcaagtctttgaagaaagaaattga 541 ||||| ||| ||||||||| | |||||||||||||||| Sbjct: 210 tatgataagaacttcaagtttctgaagaaagaaattga 173 >gnl|UG|Mm.17841 AU045821 Mus musculus cDNA, 3' end /clone=J0942C06 /clone_end=3' /gb=AU045821 /gi=3982004 /len=512 Length = 512 Score = 44.1 bits (22), Expect = 4e-04 Identities = 25/26 (96%), Positives = 25/26 (96%) Query: 516 ttcaagtctttgaagaaagaaattga 541 ||||||||| |||||||||||||||| Sbjct: 234 ttcaagtctctgaagaaagaaattga 209 >gnl|UG|Mm.21754 Synaptonemal complex protein 3 /cds=(88,852) /gb=Y08485 /gi=1619311 /len=1130 Length = 1130 Score = 36.2 bits (18), Expect = 0.11 Identities = 21/22 (95%), Positives = 21/22 (95%) Query: 520 agtctttgaagaaagaaattga 541 ||||||||||||||||| |||| Sbjct: 856 agtctttgaagaaagaacttga 877 >gnl|UG|Mm.10299 Mouse procollagen type V alpha 2 (Col5a-2) mRNA, complete cds /cds=(0,4493) /gb=L02918 /gi=309180 /len=4494 Length = 4494 Score = 36.2 bits (18), Expect = 0.11 Identities = 21/22 (95%), Positives = 21/22 (95%) Query: 304 aaggtcacagaggacactaagg 325 ||||||||||||||||| |||| Sbjct: 890 aaggtcacagaggacacaaagg 911 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3842 Number of Sequences: 15275 Number of extensions: 3842 Number of successful extensions: 274 Number of sequences better than 10: 12 length of query: 543 length of database: 15836343 effective HSP length: 17 effective length of query: 526 effective length of database: 15576668 effective search space: 8193327368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)