BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 039e07 (306 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.6332 Arachidonate 15-lipoxygenase, second type /cds=(... 129 5e-30 gnl|UG|Mm.23426 mo10f07.x1 Mus musculus cDNA, 3' end /clone=IMA... 109 5e-24 gnl|UG|Mm.23465 mo45a01.x1 Mus musculus cDNA, 3' end /clone=IMA... 103 3e-22 gnl|UG|Mm.2296 Peptidyl arginine deiminase /cds=(7,2028) /gb=D1... 101 1e-21 gnl|UG|Mm.21211 uc86b03.x1 Mus musculus cDNA, 3' end /clone=IMA... 86 7e-17 >gnl|UG|Mm.6332 Arachidonate 15-lipoxygenase, second type /cds=(13,2046) /gb=Y14696 /gi=3036863 /len=3203 Length = 3203 Score = 129 bits (65), Expect = 5e-30 Identities = 71/73 (97%), Positives = 71/73 (97%) Query: 1 gatcctgagttcaattcccagcaaccacctggtggctcacaaccatctgtaatgggattc 60 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2760 gatcctgagttcaattcccagcaaccacatggtggctcacaaccatctgtaatgggattc 2819 Query: 61 ggtgccctcttct 73 | ||||||||||| Sbjct: 2820 gatgccctcttct 2832 Score = 73.8 bits (37), Expect = 3e-13 Identities = 80/92 (86%), Positives = 80/92 (86%), Gaps = 3/92 (3%) Query: 197 gctggagagatggctcagtggttaagagcgcactggctgttcttccagaggtcctgggtt 256 |||||||||||||||||| |||||||| |||||| ||| |||||||||| ||||| ||| Sbjct: 2713 gctggagagatggctcagcggttaaga--gcactgactgctcttccagagatcctgagtt 2770 Query: 257 caaat-ccagcacccacatggcagctcacaac 287 ||| | |||||| |||||||| ||||||||| Sbjct: 2771 caattcccagcaaccacatggtggctcacaac 2802 >gnl|UG|Mm.23426 mo10f07.x1 Mus musculus cDNA, 3' end /clone=IMAGE:553189 /clone_end=3' /gb=AI428366 /len=467 Length = 467 Score = 67.9 bits (34), Expect = 2e-11 Identities = 71/81 (87%), Positives = 71/81 (87%), Gaps = 3/81 (3%) Query: 197 gctggagagatggctcagtggttaagagcgcactggctgttcttccagaggtcctgggtt 256 ||||||||||| ||||||||||||| ||| |||| ||| |||||||||||||||| ||| Sbjct: 176 gctggagagatagctcagtggttaaaagc--actgactgctcttccagaggtcctgagtt 119 Query: 257 caaat-ccagcacccacatgg 276 ||| | |||||| |||||||| Sbjct: 118 caattcccagcaaccacatgg 98 Score = 109 bits (55), Expect = 5e-24 Identities = 67/71 (94%), Positives = 67/71 (94%) Query: 3 tcctgagttcaattcccagcaaccacctggtggctcacaaccatctgtaatgggattcgg 62 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || Sbjct: 127 tcctgagttcaattcccagcaaccacatggtggctcaccaccatctgtaatgggatccga 68 Query: 63 tgccctcttct 73 ||||||||||| Sbjct: 67 tgccctcttct 57 >gnl|UG|Mm.23465 mo45a01.x1 Mus musculus cDNA, 3' end /clone=IMAGE:556488 /clone_end=3' /gb=AI428575 /len=452 Length = 452 Score = 103 bits (52), Expect = 3e-22 Identities = 92/103 (89%), Positives = 92/103 (89%), Gaps = 3/103 (2%) Query: 201 gagagatggctcagtggttaagagcgcactggctgttcttccagaggtcctgggttcaaa 260 ||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 200 gagagatggttcagtggttaagagc--accagctgttcttccagaggtcctgggttcaat 143 Query: 261 t-ccagcacccacatggcagctcacaactgtctgtagctccag 302 | |||||||| ||||||||||||||||||| || || |||||| Sbjct: 142 tcccagcacctacatggcagctcacaactgactataactccag 100 Score = 34.2 bits (17), Expect = 0.23 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 3 tcctgagttcaattcccagca 23 ||||| ||||||||||||||| Sbjct: 155 tcctgggttcaattcccagca 135 >gnl|UG|Mm.2296 Peptidyl arginine deiminase /cds=(7,2028) /gb=D16580 /gi=391765 /len=4697 Length = 4697 Score = 34.2 bits (17), Expect = 0.23 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 194 ggagctggagagatggctcag 214 ||||||| ||||||||||||| Sbjct: 3027 ggagctgcagagatggctcag 3047 Score = 58.0 bits (29), Expect = 2e-08 Identities = 29/29 (100%), Positives = 29/29 (100%) Query: 197 gctggagagatggctcagtggttaagagc 225 ||||||||||||||||||||||||||||| Sbjct: 3738 gctggagagatggctcagtggttaagagc 3710 Score = 101 bits (51), Expect = 1e-21 Identities = 66/71 (92%), Positives = 66/71 (92%) Query: 3 tcctgagttcaattcccagcaaccacctggtggctcacaaccatctgtaatgggattcgg 62 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 3689 tcctaagttcaattcccagcaaccacatggtggctcacaaccatctgtaatgggatctga 3630 Query: 63 tgccctcttct 73 ||||||||||| Sbjct: 3629 tgccctcttct 3619 >gnl|UG|Mm.21211 uc86b03.x1 Mus musculus cDNA, 3' end /clone=IMAGE:1432493 /clone_end=3' /gb=AI043059 /gi=3286319 /len=626 Length = 626 Score = 85.7 bits (43), Expect = 7e-17 Identities = 64/71 (90%), Positives = 64/71 (90%) Query: 3 tcctgagttcaattcccagcaaccacctggtggctcacaaccatctgtaatgggattcgg 62 ||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| | | Sbjct: 518 tcctgagttcaattctcagcaagcacatggtggctcacaaccatctgtaatgggttctga 459 Query: 63 tgccctcttct 73 ||||||||||| Sbjct: 458 tgccctcttct 448 Score = 56.0 bits (28), Expect = 6e-08 Identities = 55/63 (87%), Positives = 55/63 (87%), Gaps = 2/63 (3%) Query: 197 gctggagagatggctcagtggttaagagcgcactggctgttcttccagaggtcctgggtt 256 |||||||||||||||||| |||||||||| || ||| |||||||||||||||| ||| Sbjct: 202 gctggagagatggctcagcaattaagagcgc--tgactgctcttccagaggtcctgagtt 145 Query: 257 caa 259 ||| Sbjct: 144 caa 142 Score = 77.8 bits (39), Expect = 2e-14 Identities = 55/59 (93%), Positives = 55/59 (93%), Gaps = 1/59 (1%) Query: 3 tcctgagttcaattcccagc-aaccacctggtggctcacaaccatctgtaatgggattc 60 |||||||||||||||||||| |||||| || ||||||||| |||||||||||||||||| Sbjct: 153 tcctgagttcaattcccagccaaccacatgatggctcacagccatctgtaatgggattc 95 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3287 Number of Sequences: 15275 Number of extensions: 3287 Number of successful extensions: 1543 Number of sequences better than 10: 397 length of query: 306 length of database: 15836343 effective HSP length: 16 effective length of query: 290 effective length of database: 15591943 effective search space: 4521663470 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)