BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 02393 (505 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.25073 C80410 Mus musculus cDNA, 3' end /clone=J0081D0... 90 8e-18 gnl|UG|Mm.3448 Interleukin 5 receptor, alpha /cds=(302,1549) /g... 76 1e-13 gnl|UG|Mm.3179 Immunoglobulin S mu binding protein 2 /cds=(120,... 76 1e-13 gnl|UG|Mm.27537 AU016992 Mus musculus cDNA, 3' end /clone=J0732... 50 7e-06 gnl|UG|Mm.11779 AU022052 Mus musculus cDNA, 3' end /clone=J0407... 50 7e-06 >gnl|UG|Mm.25073 C80410 Mus musculus cDNA, 3' end /clone=J0081D08 /clone_end=3' /gb=C80410 /gi=2520740 /len=560 Length = 560 Score = 89.7 bits (45), Expect = 8e-18 Identities = 169/207 (81%), Positives = 169/207 (81%), Gaps = 3/207 (1%) Query: 291 gaatttcataatgtcattgtttttgatagctgagtaaaattccattgtgtaaatgtacta 350 ||||||||||| ||||| ||||| ||||||||||| | |||||||| |||| ||| | Sbjct: 465 gaatttcataaattcattctttttaatagctgagtattactccattgtntaaagttacca 406 Query: 351 cattttctatatctattcctatgttga-ggaacatcaggttctttccagcttctgacttt 409 |||||| |||| |||||| |||||| || |||| |||||||||||||||||| || | Sbjct: 405 catttt-ngtatccattcctctgttgaggggccatcgggttctttccagcttctggctat 347 Query: 410 tataattaaggcttctaggaacttagtggagcatgtgtccttgttatatgttggagcatc 469 ||||| | ||||| ||| |||| ||||||||||||||||||| ||| ||||| |||| Sbjct: 346 tataaat-aggctgctatgaacatagtggagcatgtgtccttcttaccggttgggacatc 288 Query: 470 ttttaggtatatgaccaggagtggtat 496 || | | |||||| ||||||| ||||| Sbjct: 287 ttctggatatatgcccaggagaggtat 261 >gnl|UG|Mm.3448 Interleukin 5 receptor, alpha /cds=(302,1549) /gb=D90205 /gi=220465 /len=3553 Length = 3553 Score = 75.8 bits (38), Expect = 1e-13 Identities = 62/70 (88%), Positives = 62/70 (88%) Query: 38 ttttgttcccccttctaagaaggactgaagcaacctcactttggtcatccttcttctgga 97 ||||||||||| |||||||||| | ||||| | || |||||||||| |||||||||| || Sbjct: 3293 ttttgttccccattctaagaagcagtgaagtatccacactttggtcttccttcttcttga 3352 Query: 98 gtttcatgtg 107 |||||||||| Sbjct: 3353 gtttcatgtg 3362 >gnl|UG|Mm.3179 Immunoglobulin S mu binding protein 2 /cds=(120,3101) /gb=L10075 /gi=293805 /len=5459 Length = 5459 Score = 75.8 bits (38), Expect = 1e-13 Identities = 50/54 (92%), Positives = 50/54 (92%) Query: 41 tgttcccccttctaagaaggactgaagcaacctcactttggtcatccttcttct 94 ||||||||||||||||||||||||||| | || |||||||||| |||||||||| Sbjct: 5253 tgttcccccttctaagaaggactgaagtatccacactttggtcttccttcttct 5306 Score = 67.9 bits (34), Expect = 3e-11 Identities = 55/62 (88%), Positives = 55/62 (88%) Query: 240 ttgggttacctcactcagggtaatattttctagttccatccatttgcctatgaatttcat 299 |||||||||||||||||| | |||||||||||||||||| |||||||| |||||| || Sbjct: 5387 ttgggttacctcactcagcatgatattttctagttccatctgtttgcctaagaatttaat 5446 Query: 300 aa 301 || Sbjct: 5447 aa 5448 >gnl|UG|Mm.27537 AU016992 Mus musculus cDNA, 3' end /clone=J0732H01 /clone_end=3' /gb=AU016992 /gi=3371996 /len=442 Length = 442 Score = 50.1 bits (25), Expect = 7e-06 Identities = 33/36 (91%), Positives = 33/36 (91%) Query: 456 tatgttggagcatcttttaggtatatgaccaggagt 491 |||| |||||||||||||||||||||| || ||||| Sbjct: 375 tatggtggagcatcttttaggtatatgncccggagt 410 >gnl|UG|Mm.11779 AU022052 Mus musculus cDNA, 3' end /clone=J0407F08 /clone_end=3' /gb=AU022052 /gi=3387011 /len=587 Length = 587 Score = 50.1 bits (25), Expect = 7e-06 Identities = 90/109 (82%), Positives = 90/109 (82%), Gaps = 2/109 (1%) Query: 240 ttgggttacctcactcagggtaatattttctagttccatccatttgcctatgaatttcat 299 ||||||||||||||||||| | |||| || | | |||||||||||||| ||||||||| Sbjct: 307 ttgggttacctcactcaggatgatatactccaaatgcatccatttgcctaagaatttcat 366 Query: 300 aatgtcattgtttttgatagctgagtaaaattccattgtgtaaatgtac 348 | || |||||||| |||| |||||| | ||| |||||||||||||| Sbjct: 367 gaattc-ttgtttttaatagttgagtagtactcc-ttgtgtaaatgtac 413 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3869 Number of Sequences: 15275 Number of extensions: 3869 Number of successful extensions: 1027 Number of sequences better than 10: 18 length of query: 505 length of database: 15836343 effective HSP length: 17 effective length of query: 488 effective length of database: 15576668 effective search space: 7601413984 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)