BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 01900 (383 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.17059 AU021748 Mus musculus cDNA, 3' end /clone=J0401... 76 9e-14 gnl|UG|Mm.29983 vj94c09.s1 Mus musculus cDNA, 5' end /clone=IMA... 62 1e-09 gnl|UG|Mm.23221 mm71f07.x1 Mus musculus cDNA, 3' end /clone=IMA... 56 8e-08 gnl|UG|Mm.6806 Niemann Pick type C1 /cds=(123,3959) /gb=AF00334... 50 5e-06 >gnl|UG|Mm.17059 AU021748 Mus musculus cDNA, 3' end /clone=J0401D11 /clone_end=3' /gb=AU021748 /gi=3386707 /len=590 Length = 590 Score = 75.8 bits (38), Expect = 9e-14 Identities = 68/77 (88%), Positives = 68/77 (88%), Gaps = 1/77 (1%) Query: 186 tgaagtggaaacttaagggttctctggaaagtcggttggatggtgttttgcagggacaaa 245 ||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||| |||| Sbjct: 295 tgaagtggaaacttaagggttct-tggaaagtcagttggatggtactttgctggggcaaa 353 Query: 246 aacgtgaangagtgttt 262 || |||| |||||||| Sbjct: 354 cacatgaaggagtgttt 370 >gnl|UG|Mm.29983 vj94c09.s1 Mus musculus cDNA, 5' end /clone=IMAGE:944752 /clone_end=5' /gb=AA545301 /gi=2306375 /len=655 Length = 655 Score = 61.9 bits (31), Expect = 1e-09 Identities = 41/43 (95%), Positives = 41/43 (95%), Gaps = 1/43 (2%) Query: 189 agtggaaacttaagggttctctggaaagtcggttggatggtgt 231 |||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 169 agtggaaact-aagggttctttggaaagtcggttggatggtgt 128 >gnl|UG|Mm.23221 mm71f07.x1 Mus musculus cDNA, 3' end /clone=IMAGE:533893 /clone_end=3' /gb=AI426644 /len=367 Length = 367 Score = 56.0 bits (28), Expect = 8e-08 Identities = 52/60 (86%), Positives = 52/60 (86%) Query: 186 tgaagtggaaacttaagggttctctggaaagtcggttggatggtgttttgcagggacaaa 245 ||||||||||| ||||||||||| |||||| | | ||||||| |||||||| ||| |||| Sbjct: 96 tgaagtggaaatttaagggttctttggaaaattgtttggatgatgttttgctggggcaaa 155 >gnl|UG|Mm.6806 Niemann Pick type C1 /cds=(123,3959) /gb=AF003348 /gi=2251241 /len=5029 Length = 5029 Score = 50.1 bits (25), Expect = 5e-06 Identities = 31/33 (93%), Positives = 31/33 (93%) Query: 191 tggaaacttaagggttctctggaaagtcggttg 223 |||||||||||||||||| ||||||||| |||| Sbjct: 4803 tggaaacttaagggttctttggaaagtcagttg 4771 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3215 Number of Sequences: 15275 Number of extensions: 3215 Number of successful extensions: 1071 Number of sequences better than 10: 19 length of query: 383 length of database: 15836343 effective HSP length: 16 effective length of query: 367 effective length of database: 15591943 effective search space: 5722243081 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)