BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 01626 (352 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.23372 mm31g08.x1 Mus musculus cDNA, 3' end /clone=IMA... 64 3e-10 gnl|UG|Mm.1346 Integrin alpha 4 (Cd49d) /cds=(137,3256) /gb=X53... 64 3e-10 gnl|UG|Mm.24664 vg09e05.r1 Mus musculus cDNA, 5' end /clone=IMA... 60 5e-09 gnl|UG|Mm.25900 AU015180 Mus musculus cDNA, 3' end /clone=J0708... 56 7e-08 gnl|UG|Mm.11388 AU018327 Mus musculus cDNA, 3' end /clone=J0501... 48 2e-05 >gnl|UG|Mm.23372 mm31g08.x1 Mus musculus cDNA, 3' end /clone=IMAGE:523166 /clone_end=3' /gb=AI427963 /len=332 Length = 332 Score = 63.9 bits (32), Expect = 3e-10 Identities = 41/44 (93%), Positives = 41/44 (93%) Query: 123 tttctttatttacatttcaaatgttatttcctttcctggtttcc 166 ||||||||||||||||||||||||||| ||||||| ||||||| Sbjct: 12 tttctttatttacatttcaaatgttatcccctttccaggtttcc 55 >gnl|UG|Mm.1346 Integrin alpha 4 (Cd49d) /cds=(137,3256) /gb=X53176 /gi=51484 /len=4829 Length = 4829 Score = 63.9 bits (32), Expect = 3e-10 Identities = 41/44 (93%), Positives = 41/44 (93%) Query: 123 tttctttatttacatttcaaatgttatttcctttcctggtttcc 166 ||||||||||||||||||||||||||| |||||||| |||||| Sbjct: 3728 tttctttatttacatttcaaatgttatcccctttcctagtttcc 3771 Score = 32.2 bits (16), Expect = 1.1 Identities = 19/20 (95%), Positives = 19/20 (95%) Query: 284 caggaccaagggcttctcct 303 ||||||||||||| |||||| Sbjct: 3875 caggaccaagggcctctcct 3894 >gnl|UG|Mm.24664 vg09e05.r1 Mus musculus cDNA, 5' end /clone=IMAGE:860864 /clone_end=5' /gb=AA500239 /gi=2235206 /len=462 Length = 462 Score = 60.0 bits (30), Expect = 5e-09 Identities = 33/34 (97%), Positives = 33/34 (97%) Query: 123 tttctttatttacatttcaaatgttatttccttt 156 ||||||||||||||||||||||||||| |||||| Sbjct: 90 tttctttatttacatttcaaatgttatatccttt 123 Score = 54.0 bits (27), Expect = 3e-07 Identities = 57/67 (85%), Positives = 57/67 (85%) Query: 284 caggaccaagggcttctccttccactggtgcccaacaatgccatcctctgctatatatgc 343 ||||||||||||||| || ||| || |||| ||||| |||||||||||||| |||||| Sbjct: 246 caggaccaagggcttgctctcccattgatgcctaacaaagccatcctctgctacatatgc 305 Query: 344 agttgga 350 || |||| Sbjct: 306 agctgga 312 >gnl|UG|Mm.25900 AU015180 Mus musculus cDNA, 3' end /clone=J0708G06 /clone_end=3' /gb=AU015180 /gi=3369971 /len=585 Length = 585 Score = 56.0 bits (28), Expect = 7e-08 Identities = 37/40 (92%), Positives = 37/40 (92%) Query: 127 tttatttacatttcaaatgttatttcctttcctggtttcc 166 ||||||||||||||||||||||| |||||||| |||||| Sbjct: 35 tttatttacatttcaaatgttatcccctttcctagtttcc 74 Score = 42.1 bits (21), Expect = 0.001 Identities = 51/61 (83%), Positives = 51/61 (83%) Query: 285 aggaccaagggcttctccttccactggtgcccaacaatgccatcctctgctatatatgca 344 |||||| ||||| |||||||||| || || | || | |||||||||||||| ||||||| Sbjct: 179 aggacctagggcctctccttccattgatgacagactaggccatcctctgctacatatgca 238 Query: 345 g 345 | Sbjct: 239 g 239 >gnl|UG|Mm.11388 AU018327 Mus musculus cDNA, 3' end /clone=J0501H11 /clone_end=3' /gb=AU018327 /gi=3373817 /len=379 Length = 379 Score = 48.1 bits (24), Expect = 2e-05 Identities = 39/44 (88%), Positives = 39/44 (88%) Query: 123 tttctttatttacatttcaaatgttatttcctttcctggtttcc 166 |||||||||||| |||||||||||||| ||||||||||||| Sbjct: 364 tttctttatttatatttcaaatgttatcctgtttcctggtttcc 321 Score = 30.2 bits (15), Expect = 4.2 Identities = 18/19 (94%), Positives = 18/19 (94%) Query: 285 aggaccaagggcttctcct 303 |||||||||||| |||||| Sbjct: 224 aggaccaagggcctctcct 206 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2314 Number of Sequences: 15275 Number of extensions: 2314 Number of successful extensions: 700 Number of sequences better than 10: 54 length of query: 352 length of database: 15836343 effective HSP length: 16 effective length of query: 336 effective length of database: 15591943 effective search space: 5238892848 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)