BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 01405 (490 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.6354 Mus musculus mRNA for mGpi1p, complete cds /cds=... 94 5e-19 gnl|UG|Mm.26905 uj26f10.x1 Mus musculus cDNA, 3' end /clone=IMA... 78 3e-14 gnl|UG|Mm.17491 ui65d02.x1 Mus musculus cDNA, 3' end /clone=IMA... 74 4e-13 gnl|UG|Mm.15802 Erythrocyte protein band 4.2 /cds=(162,2237) /g... 70 7e-12 gnl|UG|Mm.2562 Mesoderm posterior 2 /cds=(207,1319) /gb=U71125 ... 52 2e-06 >gnl|UG|Mm.6354 Mus musculus mRNA for mGpi1p, complete cds /cds=(140,1885) /gb=AB008895 /gi=2641975 /len=3062 Length = 3062 Score = 93.7 bits (47), Expect = 5e-19 Identities = 50/51 (98%), Positives = 50/51 (98%) Query: 335 gaccctttaatacagttcctcgtgttgtggtgaccccaaccataaaattat 385 ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2113 gaccctttaatacagttcctcatgttgtggtgaccccaaccataaaattat 2163 Score = 34.2 bits (17), Expect = 0.38 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 434 taaatatctgtgttttc 450 ||||||||||||||||| Sbjct: 2221 taaatatctgtgttttc 2237 >gnl|UG|Mm.26905 uj26f10.x1 Mus musculus cDNA, 3' end /clone=IMAGE:1921099 /clone_end=3' /gb=AI314623 /len=653 Length = 653 Score = 77.8 bits (39), Expect = 3e-14 Identities = 64/71 (90%), Positives = 64/71 (90%), Gaps = 1/71 (1%) Query: 325 ctaatgctgagaccctttaatacagttcctcgtgttgtggtga-ccccaaccataaaatt 383 ||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||| Sbjct: 649 ctaatgctgtgaccctttaatacagtttgccatgttgtggtgacccccaaccataaaatt 590 Query: 384 attttcgttgc 394 ||||| ||||| Sbjct: 589 atttttgttgc 579 >gnl|UG|Mm.17491 ui65d02.x1 Mus musculus cDNA, 3' end /clone=IMAGE:1887267 /clone_end=3' /gb=AI196559 /gi=3749165 /len=390 Length = 390 Score = 73.8 bits (37), Expect = 4e-13 Identities = 51/53 (96%), Positives = 51/53 (96%), Gaps = 2/53 (3%) Query: 337 ccctttaatacagttcctcgtgttgtggtga-ccccaaccataaaattatttt 388 |||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 303 ccctttaatacagttcctcgtg-tgtggtgacccccaaccataaaattatttt 252 Score = 38.2 bits (19), Expect = 0.024 Identities = 41/47 (87%), Positives = 41/47 (87%), Gaps = 1/47 (2%) Query: 419 ttataaatcatattgtaaatatctgtgttttccctgtggtcttaggc 465 |||| ||||||| |||| |||||||||||| || |||||||||||| Sbjct: 193 ttatgaatcataacgtaactatctgtgtttt-ccagtggtcttaggc 148 >gnl|UG|Mm.15802 Erythrocyte protein band 4.2 /cds=(162,2237) /gb=U04055 /gi=847792 /len=3470 Length = 3470 Score = 69.9 bits (35), Expect = 7e-12 Identities = 60/67 (89%), Positives = 60/67 (89%), Gaps = 1/67 (1%) Query: 323 ttctaatgctgagaccctttaatacagttcctcgtgttgtggtga-ccccaaccataaaa 381 ||||||||||||| || ||| ||||||||||||| || |||||| |||||||||||||| Sbjct: 3082 ttctaatgctgaggtccattagtacagttcctcgtattttggtgacccccaaccataaaa 3141 Query: 382 ttatttt 388 ||||||| Sbjct: 3142 ttatttt 3148 >gnl|UG|Mm.2562 Mesoderm posterior 2 /cds=(207,1319) /gb=U71125 /gi=1916632 /len=1941 Length = 1941 Score = 52.0 bits (26), Expect = 2e-06 Identities = 95/114 (83%), Positives = 95/114 (83%), Gaps = 8/114 (7%) Query: 344 atacagttcctcgtgttgtggtga----ccccaaccataaaattattttcgttgcctctt 399 |||||||||||| || |||||||| |||||||||||||||||| || |||| ||| Sbjct: 1580 atacagttcctcatggtgtggtgaccccccccaaccataaaattatctt-attgctactt 1638 Query: 400 catgac--tagttttgcga-tgttataaatcatattgtaaatatctgtgttttc 450 ||| || || |||||| | |||||||||||||| ||||||| ||||||||||| Sbjct: 1639 cataactgtaattttgctactgttataaatcataatgtaaatctctgtgttttc 1692 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4616 Number of Sequences: 15275 Number of extensions: 4616 Number of successful extensions: 1280 Number of sequences better than 10: 44 length of query: 490 length of database: 15836343 effective HSP length: 17 effective length of query: 473 effective length of database: 15576668 effective search space: 7367763964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)