BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 00440 (438 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.8321 Mus musculus rho/rac-interacting citron kinase (... 34 0.33 gnl|UG|Mm.2038 Mouse mRNA for ras-GTPase-activating protein SH3... 34 0.33 gnl|UG|Mm.29764 vu78h01.r1 Mus musculus cDNA, 5' end /clone=IMA... 32 1.3 gnl|UG|Mm.20934 Mus musculus homeodomain-interacting protein ki... 32 1.3 gnl|UG|Mm.26841 AU042629 Mus musculus cDNA, 3' end /clone=J1025... 32 1.3 >gnl|UG|Mm.8321 Mus musculus rho/rac-interacting citron kinase (Crik) mRNA, complete cds /cds=(771,6938) /gb=AF086824 /gi=3599508 /len=6954 Length = 6954 Score = 34.2 bits (17), Expect = 0.33 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 246 caccagcttctttttga 262 ||||||||||||||||| Sbjct: 2841 caccagcttctttttga 2825 >gnl|UG|Mm.2038 Mouse mRNA for ras-GTPase-activating protein SH3-domain binding protein, complete cds /cds=(68,1465) /gb=AB001927 /gi=1902906 /len=2686 Length = 2686 Score = 34.2 bits (17), Expect = 0.33 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 115 ttttgcttggtttttgt 131 ||||||||||||||||| Sbjct: 2222 ttttgcttggtttttgt 2206 >gnl|UG|Mm.29764 vu78h01.r1 Mus musculus cDNA, 5' end /clone=IMAGE:1197553 /clone_end=5' /gb=AA794583 /gi=2857538 /len=543 Length = 543 Score = 32.2 bits (16), Expect = 1.3 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 345 cagggaagagggcaag 360 |||||||||||||||| Sbjct: 329 cagggaagagggcaag 344 >gnl|UG|Mm.20934 Mus musculus homeodomain-interacting protein kinase 2 mRNA, complete cds /cds=(157,3726) /gb=AF077659 /gi=3702957 /len=3964 Length = 3964 Score = 32.2 bits (16), Expect = 1.3 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 134 ctttttattttaaaag 149 |||||||||||||||| Sbjct: 3943 ctttttattttaaaag 3958 >gnl|UG|Mm.26841 AU042629 Mus musculus cDNA, 3' end /clone=J1025B04 /clone_end=3' /gb=AU042629 /gi=3956864 /len=588 Length = 588 Score = 32.2 bits (16), Expect = 1.3 Identities = 18/19 (94%), Positives = 18/19 (94%) Query: 301 tgtaggttagttntgagtt 319 |||||||||||| |||||| Sbjct: 104 tgtaggttagttgtgagtt 86 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3407 Number of Sequences: 15275 Number of extensions: 3407 Number of successful extensions: 1000 Number of sequences better than 10: 11 length of query: 438 length of database: 15836343 effective HSP length: 17 effective length of query: 421 effective length of database: 15576668 effective search space: 6557777228 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)