BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 887f09 (401 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,236 sequences; 45,520,635 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.125783 Homo sapiens mRNA for KIAA0452 protein, partia... 38 0.056 gnl|UG|Hs.7753 Homo sapiens calumein (Calu) mRNA, complete cds ... 36 0.22 gnl|UG|Hs.10475 ow60a11.x1 Homo sapiens cDNA, 3' end /clone=IMA... 34 0.87 gnl|UG|Hs.8473 ya12b10.s2 Homo sapiens cDNA, 3' end /clone=IMAG... 34 0.87 >gnl|UG|Hs.125783 Homo sapiens mRNA for KIAA0452 protein, partial cds /cds=(0,1362) /gb=AB007921 /gi=3413865 /len=6256 Length = 6256 Score = 38.2 bits (19), Expect = 0.056 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 315 ttaaaattaaataaaactg 333 ||||||||||||||||||| Sbjct: 2296 ttaaaattaaataaaactg 2278 >gnl|UG|Hs.7753 Homo sapiens calumein (Calu) mRNA, complete cds /cds=(58,1005) /gb=AF013759 /gi=3153208 /len=3316 Length = 3316 Score = 36.2 bits (18), Expect = 0.22 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 322 taaataaaactgtttaca 339 |||||||||||||||||| Sbjct: 3291 taaataaaactgtttaca 3308 >gnl|UG|Hs.10475 ow60a11.x1 Homo sapiens cDNA, 3' end /clone=IMAGE:1651196 /clone_end=3' /gb=AI087859 /gi=3426892 /len=514 Length = 514 Score = 34.2 bits (17), Expect = 0.87 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 321 ttaaataaaactgttta 337 ||||||||||||||||| Sbjct: 2 ttaaataaaactgttta 18 >gnl|UG|Hs.8473 ya12b10.s2 Homo sapiens cDNA, 3' end /clone=IMAGE:61243 /clone_end=3' /gb=T40827 /gi=648418 /len=294 Length = 294 Score = 34.2 bits (17), Expect = 0.87 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 316 taaaattaaataaaact 332 ||||||||||||||||| Sbjct: 32 taaaattaaataaaact 16 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Feb 27, 1999 1:26 AM Number of letters in database: 45,520,635 Number of sequences in database: 62,236 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10948 Number of Sequences: 62236 Number of extensions: 10948 Number of successful extensions: 3098 Number of sequences better than 10: 25 length of query: 401 length of database: 45520635 effective HSP length: 17 effective length of query: 384 effective length of database: 44462623 effective search space: 17073647232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 16 (32.2 bits)