BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 887c03 (391 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,236 sequences; 45,520,635 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.13392 ny71c09.s1 Homo sapiens cDNA /clone=IMAGE:12837... 32 3.3 gnl|UG|Hs.54431 H.sapiens mRNA for SGP28 protein /cds=(40,777) ... 32 3.3 >gnl|UG|Hs.13392 ny71c09.s1 Homo sapiens cDNA /clone=IMAGE:1283728 /gb=AA744764 /len=592 Length = 592 Score = 32.2 bits (16), Expect = 3.3 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 351 tgatttaatttgattt 366 |||||||||||||||| Sbjct: 298 tgatttaatttgattt 283 >gnl|UG|Hs.54431 H.sapiens mRNA for SGP28 protein /cds=(40,777) /gb=X94323 /gi=1213612 /len=2124 Length = 2124 Score = 32.2 bits (16), Expect = 3.3 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 28 agggacagttgcaagg 43 |||||||||||||||| Sbjct: 731 agggacagttgcaagg 746 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Feb 27, 1999 1:26 AM Number of letters in database: 45,520,635 Number of sequences in database: 62,236 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8965 Number of Sequences: 62236 Number of extensions: 8965 Number of successful extensions: 2482 Number of sequences better than 10: 12 length of query: 391 length of database: 45520635 effective HSP length: 17 effective length of query: 374 effective length of database: 44462623 effective search space: 16629021002 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 16 (32.2 bits)