BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 886a05 (260 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,236 sequences; 45,520,635 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.133342 Homo sapiens clone 24566 mRNA sequence /cds=UN... 32 2.2 gnl|UG|Hs.107971 zn33g12.s1 Homo sapiens cDNA, 3' end /clone=IM... 32 2.2 gnl|UG|Hs.40034 Integrin, alpha 4 (antigen CD49D, alpha 4 subun... 32 2.2 gnl|UG|Hs.159753 tg66b08.x1 Homo sapiens cDNA, 3' end /clone=IM... 32 2.2 gnl|UG|Hs.55921 H.sapiens mRNA for glutaminyl-tRNA synthetase /... 32 2.2 >gnl|UG|Hs.133342 Homo sapiens clone 24566 mRNA sequence /cds=UNKNOWN /gb=AF070536 /gi=3387893 /len=1433 Length = 1433 Score = 32.2 bits (16), Expect = 2.2 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 241 tgtcccaaatacttta 256 |||||||||||||||| Sbjct: 1422 tgtcccaaatacttta 1407 >gnl|UG|Hs.107971 zn33g12.s1 Homo sapiens cDNA, 3' end /clone=IMAGE:549286 /clone_end=3' /gb=AA081349 /gi=1623163 /len=596 Length = 596 Score = 32.2 bits (16), Expect = 2.2 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 20 ttccttacctgaggct 35 |||||||||||||||| Sbjct: 321 ttccttacctgaggct 306 >gnl|UG|Hs.40034 Integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) /cds=(24,3140) /gb=X16983 /gi=33945 /len=3805 Length = 3805 Score = 32.2 bits (16), Expect = 2.2 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 35 tccttcctctctgatg 50 |||||||||||||||| Sbjct: 1053 tccttcctctctgatg 1038 >gnl|UG|Hs.159753 tg66b08.x1 Homo sapiens cDNA, 3' end /clone=IMAGE:2113719 /clone_end=3' /gb=AI393686 /len=544 Length = 544 Score = 32.2 bits (16), Expect = 2.2 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 240 ctgtcccaaatacttt 255 |||||||||||||||| Sbjct: 517 ctgtcccaaatacttt 532 >gnl|UG|Hs.55921 H.sapiens mRNA for glutaminyl-tRNA synthetase /cds=(58,4380) /gb=X54326 /gi=31957 /len=4586 Length = 4586 Score = 32.2 bits (16), Expect = 2.2 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 10 atgttggcatttcctt 25 |||||||||||||||| Sbjct: 1979 atgttggcatttcctt 1964 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Feb 27, 1999 1:26 AM Number of letters in database: 45,520,635 Number of sequences in database: 62,236 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5316 Number of Sequences: 62236 Number of extensions: 5316 Number of successful extensions: 1741 Number of sequences better than 10: 6 length of query: 260 length of database: 45520635 effective HSP length: 17 effective length of query: 243 effective length of database: 44462623 effective search space: 10804417389 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)