BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 822e02 (332 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,236 sequences; 45,520,635 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.159557 Human nuclear localization sequence receptor h... 147 7e-35 gnl|UG|Hs.99644 aa30a09.s1 Homo sapiens cDNA, 3' end /clone=IMA... 34 0.71 gnl|UG|Hs.162654 yu07c05.r1 Homo sapiens cDNA, 5' end /clone=IM... 32 2.8 gnl|UG|Hs.144499 qc01a06.x1 Homo sapiens cDNA, 3' end /clone=IM... 32 2.8 gnl|UG|Hs.153044 qf66a06.x1 Homo sapiens cDNA, 3' end /clone=IM... 32 2.8 >gnl|UG|Hs.159557 Human nuclear localization sequence receptor hSRP1alpha mRNA, complete cds /cds=(132,1721) /gb=U28386 /gi=899538 /len=1976 Length = 1976 Score = 147 bits (74), Expect = 7e-35 Identities = 119/134 (88%), Positives = 119/134 (88%) Query: 5 ttggtatcttttgcactcaagaggttcatcaaaggttccattattccacaatgaaccaga 64 ||||||||||||||| | |||||||||||||| ||||| ||||| ||||| ||||| || Sbjct: 1436 ttggtatcttttgcagttaagaggttcatcaacggttctattatgccacagtgaacaagg 1377 Query: 65 tacacaatctgttcaacagtcccaccactggtatagttggttatagcctacacagcttcc 124 ||||||||||||||||| || |||||||||||||||||||| | ||| ||||||||||| Sbjct: 1376 tacacaatctgttcaactgttccaccactggtatagttggtcacggcccacacagcttcc 1317 Query: 125 ttctgtgtcttaaa 138 || ||||||||||| Sbjct: 1316 ttttgtgtcttaaa 1303 >gnl|UG|Hs.99644 aa30a09.s1 Homo sapiens cDNA, 3' end /clone=IMAGE:814744 /clone_end=3' /gb=AA454925 /gi=2177701 /len=444 Length = 444 Score = 34.2 bits (17), Expect = 0.71 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 257 agtaaatgacctggaag 273 ||||||||||||||||| Sbjct: 166 agtaaatgacctggaag 182 >gnl|UG|Hs.162654 yu07c05.r1 Homo sapiens cDNA, 5' end /clone=IMAGE:233096 /clone_end=5' /gb=H75712 /gi=1049655 /len=451 Length = 451 Score = 32.2 bits (16), Expect = 2.8 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 190 tggctcaaatgacaaa 205 |||||||||||||||| Sbjct: 96 tggctcaaatgacaaa 81 >gnl|UG|Hs.144499 qc01a06.x1 Homo sapiens cDNA, 3' end /clone=IMAGE:1708306 /clone_end=3' /gb=AI143780 /gi=3665589 /len=466 Length = 466 Score = 32.2 bits (16), Expect = 2.8 Identities = 22/24 (91%), Positives = 22/24 (91%) Query: 124 cttctgtgtcttaaagtgcctgag 147 ||||||||||| ||||| |||||| Sbjct: 433 cttctgtgtctcaaagtccctgag 410 >gnl|UG|Hs.153044 qf66a06.x1 Homo sapiens cDNA, 3' end /clone=IMAGE:1754962 /clone_end=3' /gb=AI198859 /gi=3751465 /len=446 Length = 446 Score = 32.2 bits (16), Expect = 2.8 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 61 cagatacacaatctgt 76 |||||||||||||||| Sbjct: 112 cagatacacaatctgt 127 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Feb 27, 1999 1:26 AM Number of letters in database: 45,520,635 Number of sequences in database: 62,236 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5537 Number of Sequences: 62236 Number of extensions: 5537 Number of successful extensions: 1549 Number of sequences better than 10: 9 length of query: 332 length of database: 45520635 effective HSP length: 17 effective length of query: 315 effective length of database: 44462623 effective search space: 14005726245 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 16 (32.2 bits)