BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 398b11 (298 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,236 sequences; 45,520,635 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.62730 POU domain, class 2, transcription factor 1 /cd... 42 0.003 gnl|UG|Hs.6996 HSU55974 Homo sapiens cDNA, 3' end /clone=33276 ... 38 0.041 gnl|UG|Hs.79706 Human plectin (PLEC1) mRNA, complete cds /cds=(... 36 0.16 gnl|UG|Hs.91093 Human chitotriosidase precursor mRNA, complete ... 34 0.64 >gnl|UG|Hs.62730 POU domain, class 2, transcription factor 1 /cds=(59,2290) /gb=X13403 /gi=35126 /len=2568 Length = 2568 Score = 32.2 bits (16), Expect = 2.5 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 215 ctgtgcctgtgcctgt 230 |||||||||||||||| Sbjct: 452 ctgtgcctgtgcctgt 437 Score = 42.1 bits (21), Expect = 0.003 Identities = 21/21 (100%), Positives = 21/21 (100%) Query: 209 ctgtgcctgtgcctgtgcctg 229 ||||||||||||||||||||| Sbjct: 452 ctgtgcctgtgcctgtgcctg 432 Score = 42.1 bits (21), Expect = 0.003 Identities = 21/21 (100%), Positives = 21/21 (100%) Query: 203 ctgtgcctgtgcctgtgcctg 223 ||||||||||||||||||||| Sbjct: 452 ctgtgcctgtgcctgtgcctg 432 Score = 34.2 bits (17), Expect = 0.64 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 201 gcctgtgcctgtgcctg 217 ||||||||||||||||| Sbjct: 448 gcctgtgcctgtgcctg 432 >gnl|UG|Hs.6996 HSU55974 Homo sapiens cDNA, 3' end /clone=33276 /clone_end=3' /gb=U55974 /gi=1354530 /len=774 Length = 774 Score = 38.2 bits (19), Expect = 0.041 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 211 gtgcctgtgcctgtgcctg 229 ||||||||||||||||||| Sbjct: 634 gtgcctgtgcctgtgcctg 616 Score = 38.2 bits (19), Expect = 0.041 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 205 gtgcctgtgcctgtgcctg 223 ||||||||||||||||||| Sbjct: 634 gtgcctgtgcctgtgcctg 616 Score = 34.2 bits (17), Expect = 0.64 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 201 gcctgtgcctgtgcctg 217 ||||||||||||||||| Sbjct: 632 gcctgtgcctgtgcctg 616 >gnl|UG|Hs.79706 Human plectin (PLEC1) mRNA, complete cds /cds=(51,13775) /gb=U53204 /gi=1477645 /len=14800 Length = 14800 Score = 36.2 bits (18), Expect = 0.16 Identities = 27/30 (90%), Positives = 27/30 (90%) Query: 200 cgcctgtgcctgtgcctgtgcctgtgcctg 229 |||||||||||| ||| | ||||||||||| Sbjct: 6531 cgcctgtgcctgagcccgggcctgtgcctg 6502 >gnl|UG|Hs.91093 Human chitotriosidase precursor mRNA, complete cds /cds=(12,1412) /gb=U29615 /gi=1050957 /len=1633 Length = 1633 Score = 34.2 bits (17), Expect = 0.64 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 24 aagctggactggagggg 40 ||||||||||||||||| Sbjct: 1439 aagctggactggagggg 1423 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Feb 27, 1999 1:26 AM Number of letters in database: 45,520,635 Number of sequences in database: 62,236 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5159 Number of Sequences: 62236 Number of extensions: 5159 Number of successful extensions: 1507 Number of sequences better than 10: 13 length of query: 298 length of database: 45520635 effective HSP length: 17 effective length of query: 281 effective length of database: 44462623 effective search space: 12493997063 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)