BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 055b04 (427 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,236 sequences; 45,520,635 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.100347 Homo sapiens GW112 protein (GW112) mRNA, compl... 34 0.93 gnl|UG|Hs.155606 Homo sapiens DNA sequence from PAC 79C4 on chr... 34 0.93 gnl|UG|Hs.99693 zs56c05.r1 Homo sapiens cDNA, 5' end /clone=IMA... 34 0.93 gnl|UG|Hs.20521 H.sapiens mRNA for arginine methyltransferase, ... 34 0.93 gnl|UG|Hs.141422 yx53d10.s1 Homo sapiens cDNA, 3' end /clone=IM... 34 0.93 >gnl|UG|Hs.100347 Homo sapiens GW112 protein (GW112) mRNA, complete cds /cds=(508,1071) /gb=AF097021 /gi=3860076 /len=2830 Length = 2830 Score = 34.2 bits (17), Expect = 0.93 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 188 taattggacatattccc 204 ||||||||||||||||| Sbjct: 392 taattggacatattccc 376 >gnl|UG|Hs.155606 Homo sapiens DNA sequence from PAC 79C4 on chromosome 1q24. Contains the PMX1 gene, coding for two alternative forms of the Paired Mesoderm Homeobox protein 1 (PMX-1, PHOX-1). Contains ESTs, STSs and BAC end sequences (GSSs) /cds=(1037,1690) /gb=Z97200 /gi=3115994 /len=3500 Length = 3500 Score = 34.2 bits (17), Expect = 0.93 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 137 tctttcatattcatgctaagt 157 |||||||||||| |||||||| Sbjct: 3214 tctttcatattcctgctaagt 3194 >gnl|UG|Hs.99693 zs56c05.r1 Homo sapiens cDNA, 5' end /clone=IMAGE:701480 /clone_end=5' /gb=AA286970 /gi=1933977 /len=564 Length = 564 Score = 34.2 bits (17), Expect = 0.93 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 230 ggagaggaagggggaca 246 ||||||||||||||||| Sbjct: 447 ggagaggaagggggaca 431 >gnl|UG|Hs.20521 H.sapiens mRNA for arginine methyltransferase, splice variant, 1435 bp /cds=(189,1232) /gb=Y10805 /gi=1808643 /len=1435 Length = 1435 Score = 34.2 bits (17), Expect = 0.93 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 228 agggagaggaaggggga 244 ||||||||||||||||| Sbjct: 1311 agggagaggaaggggga 1295 >gnl|UG|Hs.141422 yx53d10.s1 Homo sapiens cDNA, 3' end /clone=IMAGE:265459 /clone_end=3' /gb=N20920 /gi=1126090 /len=464 Length = 464 Score = 34.2 bits (17), Expect = 0.93 Identities = 22/24 (91%), Positives = 22/24 (91%) Query: 126 tgctgtggctgtctttcatattca 149 |||||||| ||||||| ||||||| Sbjct: 392 tgctgtggatgtctttnatattca 369 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Feb 27, 1999 1:26 AM Number of letters in database: 45,520,635 Number of sequences in database: 62,236 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8367 Number of Sequences: 62236 Number of extensions: 8367 Number of successful extensions: 2258 Number of sequences better than 10: 16 length of query: 427 length of database: 45520635 effective HSP length: 17 effective length of query: 410 effective length of database: 44462623 effective search space: 18229675430 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 16 (32.2 bits)