BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D1Rat232 (549 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,851 sequences; 45,673,593 total letters Searching.................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.133484 HUM081G06A Homo sapiens cDNA, 3' end /clone=GE... 100 2e-20 gnl|UG|Hs.109168 HUM041F12A Homo sapiens cDNA, 3' end /clone=GE... 72 6e-12 gnl|UG|Hs.113495 hbc002C Homo sapiens cDNA, 5' end /clone=hbc00... 58 8e-08 gnl|UG|Hs.130305 EST00101 Homo sapiens cDNA /gb=AI002666 /gi=32... 40 0.020 gnl|UG|Hs.114398 HUM010A02A Homo sapiens cDNA, 3' end /clone=GE... 32 4.8 >gnl|UG|Hs.133484 HUM081G06A Homo sapiens cDNA, 3' end /clone=GEN-081G06 /clone_end=3' /gb=D80522 /gi=1178399 /len=508 Length = 508 Score = 99.6 bits (50), Expect = 2e-20 Identities = 70/74 (94%), Positives = 70/74 (94%), Gaps = 2/74 (2%) Query: 329 cacaattccacacaacatacgagccggaagcataaagtgtaaagcctggggtgcctaatg 388 ||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| Sbjct: 437 cacaattccacacaacatacgggccgga-gcataaagtgtaa-gcctggggtgcctaatg 494 Query: 389 agtgagctaactca 402 |||||||| ||||| Sbjct: 495 agtgagcttactca 508 >gnl|UG|Hs.109168 HUM041F12A Homo sapiens cDNA, 3' end /clone=GEN-041F12 /clone_end=3' /gb=D80168 /gi=1178045 /len=447 Length = 447 Score = 71.9 bits (36), Expect = 6e-12 Identities = 71/82 (86%), Positives = 71/82 (86%), Gaps = 2/82 (2%) Query: 291 atggtcatagctgtttccngtg-nnnattgntatccnnncacaattccacacaacatacg 349 ||||||||||||||||| | || |||| ||||| ||||||| ||||||||||||| Sbjct: 367 atggtcatagctgtttcnnntgtgaaattgttatccgctcacaatt-cacacaacatacg 425 Query: 350 agccggaagcataaagtgtaaa 371 |||||||||||||||||||||| Sbjct: 426 agccggaagcataaagtgtaaa 447 >gnl|UG|Hs.113495 hbc002C Homo sapiens cDNA, 5' end /clone=hbc002C /clone_end=5' /gb=T11417 /gi=391571 /len=320 Length = 320 Score = 58.0 bits (29), Expect = 8e-08 Identities = 50/53 (94%), Positives = 50/53 (94%), Gaps = 3/53 (5%) Query: 343 acatacgagccggaagcataaagtgtaaagcctggggtgcctaatgagtgagc 395 ||||||||||||||||||| |||||| |||||| ||||||||||||||||||| Sbjct: 271 acatacgagccggaagcat-aagtgt-aagcct-gggtgcctaatgagtgagc 320 >gnl|UG|Hs.130305 EST00101 Homo sapiens cDNA /gb=AI002666 /gi=3203000 /len=463 Length = 463 Score = 40.1 bits (20), Expect = 0.020 Identities = 22/23 (95%), Positives = 22/23 (95%) Query: 440 gggaaacctgtcgtgccngctgc 462 ||||||||||||||||| ||||| Sbjct: 427 gggaaacctgtcgtgccagctgc 449 >gnl|UG|Hs.114398 HUM010A02A Homo sapiens cDNA, 3' end /clone=GEN-010A02 /clone_end=3' /gb=D80038 /gi=1177915 /len=464 Length = 464 Score = 32.2 bits (16), Expect = 4.8 Identities = 52/63 (82%), Positives = 52/63 (82%), Gaps = 3/63 (4%) Query: 291 atggtcatagct-gtttccngtgnnnattgntatccnnncacaattccacacaacatacg 349 |||||||||||| ||||| ||| |||| ||||| ||||||||| ||||||||||| Sbjct: 401 atggtcatagctsktttcctgtgtaaattgttatcc-stcacaattcc-cacaacatacg 458 Query: 350 agc 352 ||| Sbjct: 459 agc 461 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Mar 4, 1999 1:26 AM Number of letters in database: 45,673,593 Number of sequences in database: 62,851 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8436 Number of Sequences: 62851 Number of extensions: 8436 Number of successful extensions: 644 Number of sequences better than 10: 28 length of query: 549 length of database: 45673593 effective HSP length: 18 effective length of query: 531 effective length of database: 44542275 effective search space: 23651948025 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 16 (32.2 bits)