BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D16Rat16 (641 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,851 sequences; 45,673,593 total letters Searching.................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.109168 HUM041F12A Homo sapiens cDNA, 3' end /clone=GE... 143 2e-33 gnl|UG|Hs.133484 HUM081G06A Homo sapiens cDNA, 3' end /clone=GE... 121 8e-27 gnl|UG|Hs.113495 hbc002C Homo sapiens cDNA, 5' end /clone=hbc00... 70 3e-11 gnl|UG|Hs.114398 HUM010A02A Homo sapiens cDNA, 3' end /clone=GE... 70 3e-11 gnl|UG|Hs.158972 fmfc36 Homo sapiens cDNA /clone=CR5-5 /gb=AA63... 62 6e-09 >gnl|UG|Hs.109168 HUM041F12A Homo sapiens cDNA, 3' end /clone=GEN-041F12 /clone_end=3' /gb=D80168 /gi=1178045 /len=447 Length = 447 Score = 143 bits (72), Expect = 2e-33 Identities = 85/89 (95%), Positives = 85/89 (95%), Gaps = 1/89 (1%) Query: 369 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacaca 428 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 360 cgtaatcatggtcatagctgtttcnnntgtgaaattgttatccgctcacaatt-cacaca 418 Query: 429 acatacgagccggaagcataaagtgtaaa 457 ||||||||||||||||||||||||||||| Sbjct: 419 acatacgagccggaagcataaagtgtaaa 447 >gnl|UG|Hs.133484 HUM081G06A Homo sapiens cDNA, 3' end /clone=GEN-081G06 /clone_end=3' /gb=D80522 /gi=1178399 /len=508 Length = 508 Score = 121 bits (61), Expect = 8e-27 Identities = 112/121 (92%), Positives = 112/121 (92%), Gaps = 6/121 (4%) Query: 369 cgtaatcatgg-tcatagctgtttcctgtgtgaaattgttatccgctcacaattccacac 427 ||||||||||| ||||||||||| || |||| ||||||||||||| |||||||||||||| Sbjct: 393 cgtaatcatggatcatagctgttccc-gtgt-aaattgttatccg-tcacaattccacac 449 Query: 428 aacatacgagccggaagcataaagtgtaaagcctggggtgcctaatgagtgagctaactc 487 |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 450 aacatacgggccgga-gcataaagtgtaa-gcctggggtgcctaatgagtgagcttactc 507 Query: 488 a 488 | Sbjct: 508 a 508 >gnl|UG|Hs.113495 hbc002C Homo sapiens cDNA, 5' end /clone=hbc002C /clone_end=5' /gb=T11417 /gi=391571 /len=320 Length = 320 Score = 69.9 bits (35), Expect = 3e-11 Identities = 102/113 (90%), Positives = 102/113 (90%), Gaps = 11/113 (9%) Query: 369 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacaca 428 |||||||||||||||||||||| ||||||||| || ||| ||||||||||| ||||| Sbjct: 219 cgtaatcatggtcatagctgtt--ctgtgtgaa--tg-tat-cgctcacaatt-cacac- 270 Query: 429 acatacgagccggaagcataaagtgtaaagcctggggtgcctaatgagtgagc 481 ||||||||||||||||||| |||||| |||||| ||||||||||||||||||| Sbjct: 271 acatacgagccggaagcat-aagtgt-aagcct-gggtgcctaatgagtgagc 320 >gnl|UG|Hs.114398 HUM010A02A Homo sapiens cDNA, 3' end /clone=GEN-010A02 /clone_end=3' /gb=D80038 /gi=1177915 /len=464 Length = 464 Score = 69.9 bits (35), Expect = 3e-11 Identities = 65/71 (91%), Positives = 65/71 (91%), Gaps = 4/71 (5%) Query: 369 cgtaatcatggtcatagct-gtttcctgtgtgaaattgttatccgctcacaattccacac 427 ||||||||||||||||||| |||||||||| |||||||||||| |||||||||| ||| Sbjct: 394 cgtaatcatggtcatagctsktttcctgtgt-aaattgttatcc-stcacaattcc-cac 450 Query: 428 aacatacgagc 438 ||||||||||| Sbjct: 451 aacatacgagc 461 >gnl|UG|Hs.158972 fmfc36 Homo sapiens cDNA /clone=CR5-5 /gb=AA631969 /gi=2554580 /len=556 Length = 556 Score = 61.9 bits (31), Expect = 6e-09 Identities = 33/34 (97%), Positives = 33/34 (97%) Query: 369 cgtaatcatggtcatagctgtttcctgtgtgaaa 402 |||||||||||||||| ||||||||||||||||| Sbjct: 523 cgtaatcatggtcatanctgtttcctgtgtgaaa 556 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Mar 4, 1999 1:26 AM Number of letters in database: 45,673,593 Number of sequences in database: 62,851 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15481 Number of Sequences: 62851 Number of extensions: 15481 Number of successful extensions: 1135 Number of sequences better than 10: 18 length of query: 641 length of database: 45673593 effective HSP length: 18 effective length of query: 623 effective length of database: 44542275 effective search space: 27749837325 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 16 (32.2 bits)