BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D10Rat33 (584 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,851 sequences; 45,673,593 total letters Searching.................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.109168 HUM041F12A Homo sapiens cDNA, 3' end /clone=GE... 125 5e-28 gnl|UG|Hs.133484 HUM081G06A Homo sapiens cDNA, 3' end /clone=GE... 96 4e-19 gnl|UG|Hs.158972 fmfc36 Homo sapiens cDNA /clone=CR5-5 /gb=AA63... 62 6e-09 gnl|UG|Hs.113495 hbc002C Homo sapiens cDNA, 5' end /clone=hbc00... 62 6e-09 gnl|UG|Hs.114398 HUM010A02A Homo sapiens cDNA, 3' end /clone=GE... 56 4e-07 >gnl|UG|Hs.109168 HUM041F12A Homo sapiens cDNA, 3' end /clone=GEN-041F12 /clone_end=3' /gb=D80168 /gi=1178045 /len=447 Length = 447 Score = 125 bits (63), Expect = 5e-28 Identities = 83/88 (94%), Positives = 83/88 (94%), Gaps = 2/88 (2%) Query: 468 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacaca 527 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 360 cgtaatcatggtcatagctgtttcnnntgtgaaattgttatccgctcacaatt-cacaca 418 Query: 528 aca-acgagccggaagcataaagtgtaa 554 ||| |||||||||||||||||||||||| Sbjct: 419 acatacgagccggaagcataaagtgtaa 446 >gnl|UG|Hs.133484 HUM081G06A Homo sapiens cDNA, 3' end /clone=GEN-081G06 /clone_end=3' /gb=D80522 /gi=1178399 /len=508 Length = 508 Score = 95.6 bits (48), Expect = 4e-19 Identities = 103/112 (91%), Positives = 103/112 (91%), Gaps = 7/112 (6%) Query: 468 cgtaatcatgg-tcatagctgtttcctgtgtgaaattgttatccgctcacaattccacac 526 ||||||||||| ||||||||||| || |||| ||||||||||||| |||||||||||||| Sbjct: 393 cgtaatcatggatcatagctgttccc-gtgt-aaattgttatccg-tcacaattccacac 449 Query: 527 aaca-acgagccggaagcataaagtgtaagcctggggtg-ctaatgagtgag 576 |||| ||| |||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 450 aacatacgggccgga-gcataaagtgtaagcctggggtgcctaatgagtgag 500 >gnl|UG|Hs.158972 fmfc36 Homo sapiens cDNA /clone=CR5-5 /gb=AA631969 /gi=2554580 /len=556 Length = 556 Score = 61.9 bits (31), Expect = 6e-09 Identities = 33/34 (97%), Positives = 33/34 (97%) Query: 468 cgtaatcatggtcatagctgtttcctgtgtgaaa 501 |||||||||||||||| ||||||||||||||||| Sbjct: 523 cgtaatcatggtcatanctgtttcctgtgtgaaa 556 >gnl|UG|Hs.113495 hbc002C Homo sapiens cDNA, 5' end /clone=hbc002C /clone_end=5' /gb=T11417 /gi=391571 /len=320 Length = 320 Score = 61.9 bits (31), Expect = 6e-09 Identities = 95/109 (87%), Positives = 95/109 (87%), Gaps = 8/109 (7%) Query: 468 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacaca 527 |||||||||||||||||||||| ||||||||| || ||| ||||||||||| |||||| Sbjct: 219 cgtaatcatggtcatagctgtt--ctgtgtgaa--tg-tat-cgctcacaatt-cacaca 271 Query: 528 acaacgagccggaagcataaagtgtaagcctggggtgctaatgagtgag 576 ||||||||||||||| ||||||||||||||| |||||||||||| Sbjct: 272 catacgagccggaagcat-aagtgtaagcctgggtgcctaatgagtgag 319 >gnl|UG|Hs.114398 HUM010A02A Homo sapiens cDNA, 3' end /clone=GEN-010A02 /clone_end=3' /gb=D80038 /gi=1177915 /len=464 Length = 464 Score = 56.0 bits (28), Expect = 4e-07 Identities = 51/56 (91%), Positives = 51/56 (91%), Gaps = 3/56 (5%) Query: 468 cgtaatcatggtcatagct-gtttcctgtgtgaaattgttatccgctcacaattcc 522 ||||||||||||||||||| |||||||||| |||||||||||| |||||||||| Sbjct: 394 cgtaatcatggtcatagctsktttcctgtgt-aaattgttatcc-stcacaattcc 447 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Mar 4, 1999 1:26 AM Number of letters in database: 45,673,593 Number of sequences in database: 62,851 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14902 Number of Sequences: 62851 Number of extensions: 14902 Number of successful extensions: 995 Number of sequences better than 10: 16 length of query: 584 length of database: 45673593 effective HSP length: 18 effective length of query: 566 effective length of database: 44542275 effective search space: 25210927650 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 16 (32.2 bits)