BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 976a12 (228 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D7Rat31 256 2e-69 D13Rat72 32 0.046 D6Rat212 26 2.8 D13Rat135 26 2.8 D7Rat220 26 2.8 >D7Rat31 Length = 519 Score = 256 bits (129), Expect = 2e-69 Identities = 129/129 (100%), Positives = 129/129 (100%) Query: 4 gatcatgaactggctgcctccctgagggtgcagaaaatgaagcttttgtttttagggtac 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 gatcatgaactggctgcctccctgagggtgcagaaaatgaagcttttgtttttagggtac 243 Query: 64 tgtccctaaagtaagttttctcagctttcactctaaacccaacattgggataaattaaaa 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 tgtccctaaagtaagttttctcagctttcactctaaacccaacattgggataaattaaaa 183 Query: 124 taaagtttt 132 ||||||||| Sbjct: 182 taaagtttt 174 Score = 89.7 bits (45), Expect = 2e-19 Identities = 45/45 (100%), Positives = 45/45 (100%) Query: 181 ctgcacaacaaacagttgagagccctgttagactttgcattgatc 225 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 ctgcacaacaaacagttgagagccctgttagactttgcattgatc 81 >D13Rat72 Length = 228 Score = 32.2 bits (16), Expect = 0.046 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 69 ctaaagtaagttttct 84 |||||||||||||||| Sbjct: 63 ctaaagtaagttttct 78 >D6Rat212 Length = 870 Score = 26.3 bits (13), Expect = 2.8 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 112 gataaattaaaat 124 ||||||||||||| Sbjct: 456 gataaattaaaat 468 >D13Rat135 Length = 590 Score = 26.3 bits (13), Expect = 2.8 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 118 ttaaaataaagtt 130 ||||||||||||| Sbjct: 272 ttaaaataaagtt 284 >D7Rat220 Length = 863 Score = 26.3 bits (13), Expect = 2.8 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 213 ctttgcattgatc 225 ||||||||||||| Sbjct: 431 ctttgcattgatc 419 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 96 Number of Sequences: 1828 Number of extensions: 96 Number of successful extensions: 27 Number of sequences better than 10: 6 length of query: 228 length of database: 1091843 effective HSP length: 14 effective length of query: 214 effective length of database: 1066251 effective search space: 228177714 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)