BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 952d10 (386 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D5Rat74 349 3e-97 D1Rat84 34 0.020 D14Rat16 32 0.080 D16Rat26 32 0.080 D7Rat90 28 1.2 >D5Rat74 Length = 676 Score = 349 bits (176), Expect = 3e-97 Identities = 185/189 (97%), Positives = 185/189 (97%) Query: 197 cgcacagacacncgcctcatagcacaggacaccaagtgaccaatcactgtagactaagtg 256 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 292 cgcacagacacacgcctcatagcacaggacaccaagtgaccaatcactgtagactaagtg 233 Query: 257 gtttaaacaacagatatctgtntctcttgcttctgaaagagggaaagtccaaggtcaaag 316 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 232 gtttaaacaacagatatctgtttctcttgcttctgaaagagggaaagtccaaggtcaaag 173 Query: 317 tgttggaagatnctgttgtgtatgtgtgcatacacttgtgcatatgtgtgcacacaatca 376 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 172 tgttggaagattctgttgtgtatgtgtgcatacacttgtgcatatgtgtgcacacaagca 113 Query: 377 caggtgcca 385 ||||||||| Sbjct: 112 caggtgcca 104 Score = 119 bits (60), Expect = 4e-28 Identities = 60/60 (100%), Positives = 60/60 (100%) Query: 72 ccctgaactgatactgggctctgaaaaccatggtgataagggtggtttctaatttcagta 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 417 ccctgaactgatactgggctctgaaaaccatggtgataagggtggtttctaatttcagta 358 >D1Rat84 Length = 428 Score = 34.2 bits (17), Expect = 0.020 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 332 ttgtgtatgtgtgcata 348 ||||||||||||||||| Sbjct: 170 ttgtgtatgtgtgcata 154 >D14Rat16 Length = 574 Score = 32.2 bits (16), Expect = 0.080 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 333 tgtgtatgtgtgcata 348 |||||||||||||||| Sbjct: 101 tgtgtatgtgtgcata 116 >D16Rat26 Length = 483 Score = 32.2 bits (16), Expect = 0.080 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 333 tgtgtatgtgtgcata 348 |||||||||||||||| Sbjct: 262 tgtgtatgtgtgcata 277 >D7Rat90 Length = 415 Score = 28.2 bits (14), Expect = 1.2 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 353 tgtgcatatgtgtg 366 |||||||||||||| Sbjct: 50 tgtgcatatgtgtg 37 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 570 Number of Sequences: 1828 Number of extensions: 570 Number of successful extensions: 347 Number of sequences better than 10: 60 length of query: 386 length of database: 1091843 effective HSP length: 14 effective length of query: 372 effective length of database: 1066251 effective search space: 396645372 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)