BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 916h11 (147 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D15Rat36 101 4e-23 D9Rat73 26 1.8 D10Rat65 26 1.8 D9Rat49 26 1.8 D20Rat81 26 1.8 >D15Rat36 Length = 601 Score = 101 bits (51), Expect = 4e-23 Identities = 51/51 (100%), Positives = 51/51 (100%) Query: 4 gatcgctaagatataggacactgtgaatccatatgcacagataagtccaaa 54 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 320 gatcgctaagatataggacactgtgaatccatatgcacagataagtccaaa 370 Score = 63.9 bits (32), Expect = 8e-12 Identities = 32/32 (100%), Positives = 32/32 (100%) Query: 113 cctgcacccatacacattgcagtcacaggatc 144 |||||||||||||||||||||||||||||||| Sbjct: 427 cctgcacccatacacattgcagtcacaggatc 458 >D9Rat73 Length = 611 Score = 26.3 bits (13), Expect = 1.8 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 117 cacccatacacat 129 ||||||||||||| Sbjct: 260 cacccatacacat 248 >D10Rat65 Length = 589 Score = 26.3 bits (13), Expect = 1.8 Identities = 16/17 (94%), Positives = 16/17 (94%) Query: 115 tgcacccatacacattg 131 ||||| ||||||||||| Sbjct: 76 tgcacacatacacattg 60 >D9Rat49 Length = 570 Score = 26.3 bits (13), Expect = 1.8 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 30 atccatatgcaca 42 ||||||||||||| Sbjct: 50 atccatatgcaca 62 >D20Rat81 Length = 851 Score = 26.3 bits (13), Expect = 1.8 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 117 cacccatacacat 129 ||||||||||||| Sbjct: 154 cacccatacacat 142 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 38 Number of Sequences: 1828 Number of extensions: 38 Number of successful extensions: 14 Number of sequences better than 10: 5 length of query: 147 length of database: 1091843 effective HSP length: 14 effective length of query: 133 effective length of database: 1066251 effective search space: 141811383 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 12 (24.3 bits)