BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 913a05 (252 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D15Rat68 68 9e-13 D10Rat84 28 0.80 D5Rat50 26 3.2 D6Rat222 26 3.2 D16Rat102 26 3.2 >D15Rat68 Length = 838 Score = 67.9 bits (34), Expect = 9e-13 Identities = 40/42 (95%), Positives = 40/42 (95%) Query: 5 atccttatcaattggttgtaagttcattgtgtagatgtattg 46 |||||||||||||||||||||||| ||||||| ||||||||| Sbjct: 173 atccttatcaattggttgtaagtttattgtgtggatgtattg 214 >D10Rat84 Length = 392 Score = 28.2 bits (14), Expect = 0.80 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 140 aaatttctcttaaa 153 |||||||||||||| Sbjct: 73 aaatttctcttaaa 86 >D5Rat50 Length = 401 Score = 26.3 bits (13), Expect = 3.2 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 114 gtaaagctaggta 126 ||||||||||||| Sbjct: 153 gtaaagctaggta 165 >D6Rat222 Length = 553 Score = 26.3 bits (13), Expect = 3.2 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 156 tttttaaataaat 168 ||||||||||||| Sbjct: 9 tttttaaataaat 21 >D16Rat102 Length = 578 Score = 26.3 bits (13), Expect = 3.2 Identities = 16/17 (94%), Positives = 16/17 (94%) Query: 160 taaataaatgccataaa 176 ||||||||||| ||||| Sbjct: 183 taaataaatgcaataaa 167 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 50 Number of Sequences: 1828 Number of extensions: 50 Number of successful extensions: 18 Number of sequences better than 10: 6 length of query: 252 length of database: 1091843 effective HSP length: 14 effective length of query: 238 effective length of database: 1066251 effective search space: 253767738 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)