BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 910g07 (140 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D20Rat22 107 6e-25 D8Rat110 26 1.7 >D20Rat22 Length = 566 Score = 107 bits (54), Expect = 6e-25 Identities = 54/54 (100%), Positives = 54/54 (100%) Query: 84 cgcctatgtatggatgaaagtgctgttgtggagaatggagaacggagaatgatc 137 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 200 cgcctatgtatggatgaaagtgctgttgtggagaatggagaacggagaatgatc 147 Score = 83.8 bits (42), Expect = 8e-18 Identities = 42/42 (100%), Positives = 42/42 (100%) Query: 4 gatcaacatttaagttaccctgtgaaagtaggaggcaaagaa 45 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 288 gatcaacatttaagttaccctgtgaaagtaggaggcaaagaa 247 >D8Rat110 Length = 321 Score = 26.3 bits (13), Expect = 1.7 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 25 gtgaaagtaggag 37 ||||||||||||| Sbjct: 146 gtgaaagtaggag 134 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 36 Number of Sequences: 1828 Number of extensions: 36 Number of successful extensions: 10 Number of sequences better than 10: 2 length of query: 140 length of database: 1091843 effective HSP length: 14 effective length of query: 126 effective length of database: 1066251 effective search space: 134347626 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 12 (24.3 bits)