BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 851g03 (356 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D15Rat73 66 5e-12 D3Rat81 32 0.073 D2Rat253 32 0.073 D6Rat82 32 0.073 D4Rat128 28 1.1 >D15Rat73 Length = 523 Score = 65.9 bits (33), Expect = 5e-12 Identities = 33/33 (100%), Positives = 33/33 (100%) Query: 244 ctctgcttggctttccctttgttctgctttcta 276 ||||||||||||||||||||||||||||||||| Sbjct: 459 ctctgcttggctttccctttgttctgctttcta 427 >D3Rat81 Length = 587 Score = 32.2 bits (16), Expect = 0.073 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 11 aacatccacatggcag 26 |||||||||||||||| Sbjct: 361 aacatccacatggcag 346 >D2Rat253 Length = 663 Score = 32.2 bits (16), Expect = 0.073 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 69 ccctcttctggcctct 84 |||||||||||||||| Sbjct: 242 ccctcttctggcctct 227 >D6Rat82 Length = 437 Score = 32.2 bits (16), Expect = 0.073 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 35 catctgtaactccagt 50 |||||||||||||||| Sbjct: 153 catctgtaactccagt 168 >D4Rat128 Length = 567 Score = 28.2 bits (14), Expect = 1.1 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 38 ctgtaactccagtt 51 |||||||||||||| Sbjct: 233 ctgtaactccagtt 246 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 156 Number of Sequences: 1828 Number of extensions: 156 Number of successful extensions: 54 Number of sequences better than 10: 29 length of query: 356 length of database: 1091843 effective HSP length: 14 effective length of query: 342 effective length of database: 1066251 effective search space: 364657842 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)