BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 838e04 (393 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8Rat76 232 4e-62 D7Rat90 36 0.005 D5Rat206 32 0.081 D5Rat109 32 0.081 D13Rat10 30 0.32 >D8Rat76 Length = 634 Score = 232 bits (117), Expect = 4e-62 Identities = 117/117 (100%), Positives = 117/117 (100%) Query: 225 taggtgcatgtatgtgtgcagaagtcagttaggtgccttcctcaatcactgtcctgtctt 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 taggtgcatgtatgtgtgcagaagtcagttaggtgccttcctcaatcactgtcctgtctt 271 Query: 285 tggagatggagtctctccctgaacttgaccatctgctcccacctcccgttactggag 341 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 tggagatggagtctctccctgaacttgaccatctgctcccacctcccgttactggag 328 Score = 188 bits (95), Expect = 6e-49 Identities = 109/111 (98%), Positives = 109/111 (98%), Gaps = 2/111 (1%) Query: 52 ctcctgccactgtgcctgtgctgctgggaaaggagggatggaaaaaagaa-ccaccaatt 110 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 41 ctcctgccactgtgcctgtgctgctgggaaaggagggatggaaaaaagaatccaccaatt 100 Query: 111 cttacctgccatttggaaacg-ccacatttcccttctacttcctgtgtgca 160 ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 101 cttacctgccatttggaaacgcccacatttcccttctacttcctgtgtgca 151 >D7Rat90 Length = 415 Score = 36.2 bits (18), Expect = 0.005 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 228 gtgcatgtatgtgtgcag 245 |||||||||||||||||| Sbjct: 123 gtgcatgtatgtgtgcag 106 >D5Rat206 Length = 537 Score = 32.2 bits (16), Expect = 0.081 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 228 gtgcatgtatgtgtgc 243 |||||||||||||||| Sbjct: 329 gtgcatgtatgtgtgc 344 >D5Rat109 Length = 661 Score = 32.2 bits (16), Expect = 0.081 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 227 ggtgcatgtatgtgtg 242 |||||||||||||||| Sbjct: 175 ggtgcatgtatgtgtg 160 >D13Rat10 Length = 636 Score = 30.2 bits (15), Expect = 0.32 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 228 gtgcatgtatgtgtg 242 ||||||||||||||| Sbjct: 207 gtgcatgtatgtgtg 221 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 277 Number of Sequences: 1828 Number of extensions: 277 Number of successful extensions: 106 Number of sequences better than 10: 14 length of query: 393 length of database: 1091843 effective HSP length: 14 effective length of query: 379 effective length of database: 1066251 effective search space: 404109129 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)