BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 814a01 (257 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D16Rat96 214 7e-57 D16Rat94 28 0.81 D13Rat68 28 0.81 D6Rat108 26 3.2 DXRat8 26 3.2 >D16Rat96 Length = 830 Score = 214 bits (108), Expect = 7e-57 Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 36 ctcaaaatgtccatttacaggaattttttcttctctgcctatatgaatgtccctcctgtg 95 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42 ctcaaaatgtccatttacaggaattttttcttctctgcctatatgaatgtccctcctgtg 101 Query: 96 taaaggaagactgacccaatcccgtgatgggttttgagaagtctgtta 143 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102 taaaggaagactgacccaatcccgtgatgggttttgagaagtctgtta 149 Score = 44.1 bits (22), Expect = 1e-05 Identities = 22/22 (100%), Positives = 22/22 (100%) Query: 234 gcggtgcttggtgggggtgatc 255 |||||||||||||||||||||| Sbjct: 238 gcggtgcttggtgggggtgatc 259 >D16Rat94 Length = 666 Score = 28.2 bits (14), Expect = 0.81 Identities = 17/18 (94%), Positives = 17/18 (94%) Query: 124 gggttttgagaagtctgt 141 |||||||||||| ||||| Sbjct: 255 gggttttgagaactctgt 272 >D13Rat68 Length = 526 Score = 28.2 bits (14), Expect = 0.81 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 60 tttttcttctctgc 73 |||||||||||||| Sbjct: 119 tttttcttctctgc 132 >D6Rat108 Length = 519 Score = 26.3 bits (13), Expect = 3.2 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 63 ttcttctctgcct 75 ||||||||||||| Sbjct: 69 ttcttctctgcct 81 >DXRat8 Length = 406 Score = 26.3 bits (13), Expect = 3.2 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 35 gctcaaaatgtcc 47 ||||||||||||| Sbjct: 175 gctcaaaatgtcc 187 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 81 Number of Sequences: 1828 Number of extensions: 81 Number of successful extensions: 16 Number of sequences better than 10: 6 length of query: 257 length of database: 1091843 effective HSP length: 14 effective length of query: 243 effective length of database: 1066251 effective search space: 259098993 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)