BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 811h11 (286 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D13Rat138 115 5e-27 D15Rat25 34 0.015 D10Rat81 30 0.23 D13Rat10 30 0.23 D7Rat194 26 3.6 >D13Rat138 Length = 448 Score = 115 bits (58), Expect = 5e-27 Identities = 60/61 (98%), Positives = 60/61 (98%) Query: 1 ttattttaaatgtanttagttctccttattttttgtatatgtatacatgcatgtgtttat 60 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166 ttattttaaatgtatttagttctccttattttttgtatatgtatacatgcatgtgtttat 225 Query: 61 t 61 | Sbjct: 226 t 226 Score = 97.6 bits (49), Expect = 1e-21 Identities = 55/58 (94%), Positives = 55/58 (94%) Query: 120 tctgtatgtgtatacatgcaggtgagaggtgaggttggttatcttcctcaattccttt 177 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||| Sbjct: 297 tctgtatgtgtanacatncaggtgagaggtgaggttggtnatcttcctcaattccttt 354 Score = 28.2 bits (14), Expect = 0.91 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 78 aaagtatacatgta 91 |||||||||||||| Sbjct: 243 aaagtatacatgta 256 Score = 28.2 bits (14), Expect = 0.91 Identities = 17/18 (94%), Positives = 17/18 (94%) Query: 122 tgtatgtgtatacatgca 139 ||||| |||||||||||| Sbjct: 199 tgtatatgtatacatgca 216 >D15Rat25 Length = 669 Score = 34.2 bits (17), Expect = 0.015 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 36 tatatgtatacatgcatgtgt 56 |||||| |||||||||||||| Sbjct: 95 tatatgcatacatgcatgtgt 75 >D10Rat81 Length = 454 Score = 30.2 bits (15), Expect = 0.23 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 34 tgtatatgtatacat 48 ||||||||||||||| Sbjct: 181 tgtatatgtatacat 195 Score = 26.3 bits (13), Expect = 3.6 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 36 tatatgtatacat 48 ||||||||||||| Sbjct: 167 tatatgtatacat 155 >D13Rat10 Length = 636 Score = 30.2 bits (15), Expect = 0.23 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 155 tggttatcttcctca 169 ||||||||||||||| Sbjct: 72 tggttatcttcctca 86 >D7Rat194 Length = 611 Score = 26.3 bits (13), Expect = 3.6 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 44 tacatgcatgtgt 56 ||||||||||||| Sbjct: 259 tacatgcatgtgt 247 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 233 Number of Sequences: 1828 Number of extensions: 233 Number of successful extensions: 78 Number of sequences better than 10: 25 length of query: 286 length of database: 1091843 effective HSP length: 14 effective length of query: 272 effective length of database: 1066251 effective search space: 290020272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)