BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 742g03 (358 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D2Rat90 64 2e-11 D18Rat71 30 0.29 D17Rat75 28 1.2 D14Rat10 28 1.2 D2Rat113 28 1.2 >D2Rat90 Length = 568 Score = 63.9 bits (32), Expect = 2e-11 Identities = 35/36 (97%), Positives = 35/36 (97%) Query: 233 ttttattttacttatcaatccagtcatttactctag 268 ||||||||||| |||||||||||||||||||||||| Sbjct: 187 ttttattttacatatcaatccagtcatttactctag 152 >D18Rat71 Length = 535 Score = 30.2 bits (15), Expect = 0.29 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 230 gtcttttattttact 244 ||||||||||||||| Sbjct: 51 gtcttttattttact 65 >D17Rat75 Length = 692 Score = 28.2 bits (14), Expect = 1.2 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 169 tctctttttatcct 182 |||||||||||||| Sbjct: 67 tctctttttatcct 54 >D14Rat10 Length = 573 Score = 28.2 bits (14), Expect = 1.2 Identities = 17/18 (94%), Positives = 17/18 (94%) Query: 273 ccttttattatcctttga 290 |||||||||||| ||||| Sbjct: 14 ccttttattatcatttga 31 >D2Rat113 Length = 414 Score = 28.2 bits (14), Expect = 1.2 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 6 agcttttccagtct 19 |||||||||||||| Sbjct: 226 agcttttccagtct 239 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 224 Number of Sequences: 1828 Number of extensions: 224 Number of successful extensions: 57 Number of sequences better than 10: 21 length of query: 358 length of database: 1091843 effective HSP length: 14 effective length of query: 344 effective length of database: 1066251 effective search space: 366790344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)