BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 701c05 (267 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D9Rat102 98 1e-21 D3Rat34 30 0.21 D5Rat33 28 0.85 DXRat23 28 0.85 D2Rat150 28 0.85 >D9Rat102 Length = 300 Score = 97.6 bits (49), Expect = 1e-21 Identities = 103/120 (85%), Positives = 103/120 (85%), Gaps = 2/120 (1%) Query: 7 acagagctagatggagatgcttaatgactgggcagctgtatttcatgtttcatggatgta 66 ||||||||| |||||||||| |||||||| |||||| |||| |||||||||| ||| Sbjct: 26 acagagctacatggagatgccaaatgactgtn-agctgtctttcgtgtttcatgggngta 84 Query: 67 atgtgaantcttagagtacttttntcatgaaacttggaaatagagggaaacacaggttca 126 ||||||| | | ||| | ||||| | |||||||||||||||||||||||||||||||||| Sbjct: 85 atgtgaact-tnagaattcttttcttatgaaacttggaaatagagggaaacacaggttca 143 >D3Rat34 Length = 746 Score = 30.2 bits (15), Expect = 0.21 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 252 aacacacagcatgat 266 ||||||||||||||| Sbjct: 193 aacacacagcatgat 179 >D5Rat33 Length = 539 Score = 28.2 bits (14), Expect = 0.85 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 100 ttggaaatagaggg 113 |||||||||||||| Sbjct: 354 ttggaaatagaggg 341 >DXRat23 Length = 559 Score = 28.2 bits (14), Expect = 0.85 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 129 agtgaaaacacaca 142 |||||||||||||| Sbjct: 133 agtgaaaacacaca 120 >D2Rat150 Length = 626 Score = 28.2 bits (14), Expect = 0.85 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 134 aaacacacaaacat 147 |||||||||||||| Sbjct: 92 aaacacacaaacat 79 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 238 Number of Sequences: 1828 Number of extensions: 238 Number of successful extensions: 48 Number of sequences better than 10: 20 length of query: 267 length of database: 1091843 effective HSP length: 14 effective length of query: 253 effective length of database: 1066251 effective search space: 269761503 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)