BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 541h10 (204 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DXRat145 109 2e-25 D7Rat65 30 0.16 D2Rat253 30 0.16 D7Rat156 28 0.64 >DXRat145 Length = 821 Score = 109 bits (55), Expect = 2e-25 Identities = 69/71 (97%), Positives = 69/71 (97%), Gaps = 2/71 (2%) Query: 1 gaattgaccaacttttattgaaccacttctgtggtgtgttttaaaagattttacat-cct 59 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct: 127 gaattgaccaacttttattgaaccact-ctgtggtgtgttttaaaagattttacatacct 185 Query: 60 tagcttgcttt 70 ||||||||||| Sbjct: 186 tagcttgcttt 196 Score = 46.1 bits (23), Expect = 3e-06 Identities = 23/23 (100%), Positives = 23/23 (100%) Query: 149 tacacacacatgttggggggagg 171 ||||||||||||||||||||||| Sbjct: 278 tacacacacatgttggggggagg 300 Score = 46.1 bits (23), Expect = 3e-06 Identities = 23/23 (100%), Positives = 23/23 (100%) Query: 182 gtgcgccctatctgctctgaatt 204 ||||||||||||||||||||||| Sbjct: 313 gtgcgccctatctgctctgaatt 335 >D7Rat65 Length = 746 Score = 30.2 bits (15), Expect = 0.16 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 34 gtgtgttttaaaaga 48 ||||||||||||||| Sbjct: 229 gtgtgttttaaaaga 243 >D2Rat253 Length = 663 Score = 30.2 bits (15), Expect = 0.16 Identities = 18/19 (94%), Positives = 18/19 (94%) Query: 150 acacacacatgttgggggg 168 ||||||||||| ||||||| Sbjct: 154 acacacacatggtgggggg 136 >D7Rat156 Length = 396 Score = 28.2 bits (14), Expect = 0.64 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 62 gcttgctttctcct 75 |||||||||||||| Sbjct: 66 gcttgctttctcct 53 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 236 Number of Sequences: 1828 Number of extensions: 236 Number of successful extensions: 64 Number of sequences better than 10: 14 length of query: 204 length of database: 1091843 effective HSP length: 14 effective length of query: 190 effective length of database: 1066251 effective search space: 202587690 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 12 (24.3 bits)