BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 525a06 (457 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D11Rat96 228 8e-61 D7Rat218 28 1.5 D7Rat113 28 1.5 >D11Rat96 Length = 757 Score = 228 bits (115), Expect = 8e-61 Identities = 115/115 (100%), Positives = 115/115 (100%) Query: 343 aaaacaatagtgaaagaaacagggccatgagattgaaagaaagtgggttgcatgggagtg 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 173 aaaacaatagtgaaagaaacagggccatgagattgaaagaaagtgggttgcatgggagtg 232 Query: 403 gctggagggaagaaagggatgagagggaaataaaatataatctatctataaaatt 457 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 gctggagggaagaaagggatgagagggaaataaaatataatctatctataaaatt 287 Score = 170 bits (86), Expect = 2e-43 Identities = 86/86 (100%), Positives = 86/86 (100%) Query: 197 ctagggagactatttttatccaataccaaatggtcagttcagaaaatacatacctacaag 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14 ctagggagactatttttatccaataccaaatggtcagttcagaaaatacatacctacaag 73 Query: 257 taacgttatcctgactaagcaggata 282 |||||||||||||||||||||||||| Sbjct: 74 taacgttatcctgactaagcaggata 99 >D7Rat218 Length = 869 Score = 28.2 bits (14), Expect = 1.5 Identities = 17/18 (94%), Positives = 17/18 (94%) Query: 150 caagcaataaggagtgcc 167 ||||||||||||| |||| Sbjct: 707 caagcaataaggattgcc 690 >D7Rat113 Length = 490 Score = 28.2 bits (14), Expect = 1.5 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 78 aagacaacaccaat 91 |||||||||||||| Sbjct: 115 aagacaacaccaat 128 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 232 Number of Sequences: 1828 Number of extensions: 232 Number of successful extensions: 58 Number of sequences better than 10: 5 length of query: 457 length of database: 1091843 effective HSP length: 15 effective length of query: 442 effective length of database: 1064423 effective search space: 470474966 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)