BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 331g04 (344 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D7Rat76 70 3e-13 D3Rat44 28 1.1 D19Rat53 26 4.4 D1Rat188 26 4.4 >D7Rat76 Length = 624 Score = 69.9 bits (35), Expect = 3e-13 Identities = 69/79 (87%), Positives = 69/79 (87%), Gaps = 2/79 (2%) Query: 5 gataaacanttctctgcacccaaatcccg-tgggagggagagctgaaccttcatanaggc 63 |||||||| |||||| |||||| |||||| |||||||||||||| |||||||| | ||| Sbjct: 461 gataaacagttctctncacccacatcccggtgggagggagagctaaaccttcagagaggg 520 Query: 64 agacaancctgggaaacca 82 |||||| ||||||||||| Sbjct: 521 agacaag-ctgggaaacca 538 >D3Rat44 Length = 657 Score = 28.2 bits (14), Expect = 1.1 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 214 ccattctctctctc 227 |||||||||||||| Sbjct: 258 ccattctctctctc 245 >D19Rat53 Length = 589 Score = 26.3 bits (13), Expect = 4.4 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 215 cattctctctctc 227 ||||||||||||| Sbjct: 176 cattctctctctc 164 >D1Rat188 Length = 403 Score = 26.3 bits (13), Expect = 4.4 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 32 cgtgggagggaga 44 ||||||||||||| Sbjct: 193 cgtgggagggaga 205 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 191 Number of Sequences: 1828 Number of extensions: 191 Number of successful extensions: 42 Number of sequences better than 10: 12 length of query: 344 length of database: 1091843 effective HSP length: 14 effective length of query: 330 effective length of database: 1066251 effective search space: 351862830 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)