BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 085c10 (331 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D12Rat66 60 3e-10 D13Rat140 38 0.001 D10Rat119 38 0.001 D14Rat133 38 0.001 D15Rat106 38 0.001 >D12Rat66 Length = 612 Score = 60.0 bits (30), Expect = 3e-10 Identities = 65/76 (85%), Positives = 65/76 (85%), Gaps = 1/76 (1%) Query: 15 taagccagccccagttnaatgctgtcctttataattattgcattagtcatggtgtctgtt 74 |||||||| |||| || |||| ||||||| |||| |||| || ||||||||||||||| Sbjct: 244 taagccagtcccaattaaatgttgtcctt-ataagagttgccttggtcatggtgtctgtt 186 Query: 75 cacagcngtaaaaccc 90 |||||| ||||||||| Sbjct: 185 cacagcagtaaaaccc 170 >D13Rat140 Length = 590 Score = 38.2 bits (19), Expect = 0.001 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 282 acacacacacgcacgcaca 300 ||||||||||||||||||| Sbjct: 175 acacacacacgcacgcaca 157 Score = 26.3 bits (13), Expect = 4.2 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 285 cacacacgcacgc 297 ||||||||||||| Sbjct: 160 cacacacgcacgc 148 >D10Rat119 Length = 315 Score = 38.2 bits (19), Expect = 0.001 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 282 acacacacacgcacgcaca 300 ||||||||||||||||||| Sbjct: 191 acacacacacgcacgcaca 209 >D14Rat133 Length = 900 Score = 38.2 bits (19), Expect = 0.001 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 282 acacacacacgcacgcaca 300 ||||||||||||||||||| Sbjct: 99 acacacacacgcacgcaca 117 >D15Rat106 Length = 470 Score = 38.2 bits (19), Expect = 0.001 Identities = 22/23 (95%), Positives = 22/23 (95%) Query: 282 acacacacacgcacgcacaaata 304 |||||||||| |||||||||||| Sbjct: 77 acacacacacacacgcacaaata 55 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1042 Number of Sequences: 1828 Number of extensions: 1042 Number of successful extensions: 663 Number of sequences better than 10: 124 length of query: 331 length of database: 1091843 effective HSP length: 14 effective length of query: 317 effective length of database: 1066251 effective search space: 338001567 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)