BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 081e05 (301 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D9Rat91 139 4e-34 D7Rat113 74 2e-14 D13Rat161 40 3e-04 D7Rat90 28 0.96 >D9Rat91 Length = 557 Score = 139 bits (70), Expect = 4e-34 Identities = 114/129 (88%), Positives = 114/129 (88%) Query: 1 gatcaaggacctccacatcaaagcagacacactcaaactaatagaagaaaaactagggaa 60 |||||||||||||||||||||| |||| |||||||||||||||||||||||| | ||||| Sbjct: 62 gatcaaggacctccacatcaaaccagatacactcaaactaatagaagaaaaagtggggaa 121 Query: 61 gcatctggaacacatgggcactggaaaaaatttcctaaaccaaacaccaatggcttacgc 120 | ||| ||||||||||||||||| |||||||||| ||| ||||||||||||||| | Sbjct: 122 gagtctcaaacacatgggcactggagaaaatttcctgaacagaacaccaatggcttatgt 181 Query: 121 tctaanatc 129 ||||| ||| Sbjct: 182 tctaagatc 190 >D7Rat113 Length = 490 Score = 73.8 bits (37), Expect = 2e-14 Identities = 46/49 (93%), Positives = 46/49 (93%) Query: 4 caaggacctccacatcaaagcagacacactcaaactaatagaagaaaaa 52 |||||||||||||||||||| ||| ||||||||||||||| |||||||| Sbjct: 21 caaggacctccacatcaaaggagaaacactcaaactaataaaagaaaaa 69 >D13Rat161 Length = 837 Score = 40.1 bits (20), Expect = 3e-04 Identities = 32/36 (88%), Positives = 32/36 (88%) Query: 14 cacatcaaagcagacacactcaaactaatagaagaa 49 ||||| ||| |||| ||||||||||||||| ||||| Sbjct: 148 cacattaaaccagatacactcaaactaataaaagaa 183 >D7Rat90 Length = 415 Score = 28.2 bits (14), Expect = 0.96 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 216 tgtgcaggcatgtg 229 |||||||||||||| Sbjct: 112 tgtgcaggcatgtg 99 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 100 Number of Sequences: 1828 Number of extensions: 100 Number of successful extensions: 32 Number of sequences better than 10: 10 length of query: 301 length of database: 1091843 effective HSP length: 14 effective length of query: 287 effective length of database: 1066251 effective search space: 306014037 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)