BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 072f11 (550 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D3Rat67 68 2e-12 D14Rat34 28 1.8 D17Rat46 28 1.8 D6Rat100 28 1.8 D2Rat262 28 1.8 >D3Rat67 Length = 446 Score = 67.9 bits (34), Expect = 2e-12 Identities = 67/76 (88%), Positives = 67/76 (88%), Gaps = 2/76 (2%) Query: 256 gctgaataaaccctttcctcccnaacatgcttattggtcangatgtnttgtggaggaata 315 |||||||||||||||||||||| | | ||||| ||||||| ||||| |||| ||||||| Sbjct: 446 gctgaataaaccctttcctccccagcttgcttcttggtcatgatgt-ttgtacaggaata 388 Query: 316 gaaa-cctgactaaga 330 |||| ||||||||||| Sbjct: 387 gaaaccctgactaaga 372 >D14Rat34 Length = 505 Score = 28.2 bits (14), Expect = 1.8 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 429 gaaagggtaaaata 442 |||||||||||||| Sbjct: 437 gaaagggtaaaata 424 >D17Rat46 Length = 719 Score = 28.2 bits (14), Expect = 1.8 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 415 acagttctaaagtt 428 |||||||||||||| Sbjct: 403 acagttctaaagtt 416 >D6Rat100 Length = 519 Score = 28.2 bits (14), Expect = 1.8 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 424 aagttgaaagggta 437 |||||||||||||| Sbjct: 120 aagttgaaagggta 133 >D2Rat262 Length = 514 Score = 28.2 bits (14), Expect = 1.8 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 264 aaccctttcctccc 277 |||||||||||||| Sbjct: 407 aaccctttcctccc 394 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 137 Number of Sequences: 1828 Number of extensions: 137 Number of successful extensions: 11 Number of sequences better than 10: 5 length of query: 550 length of database: 1091843 effective HSP length: 15 effective length of query: 535 effective length of database: 1064423 effective search space: 569466305 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)