BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 055b10 (246 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D1Rat430 72 6e-14 D4Rat60 40 2e-04 D3Rat239 40 2e-04 D15Rat64 36 0.003 D6Rat82 32 0.050 >D1Rat430 Length = 729 Score = 71.9 bits (36), Expect = 6e-14 Identities = 72/84 (85%), Positives = 72/84 (85%) Query: 13 ctggagttacagacagttatgagctgccacgtgggtgctgggaatagaacctgagttctc 72 |||||||||||||||||| ||| |||||| |||| ||||||||| ||||||| || ||| Sbjct: 80 ctggagttacagacagttgtgaactgccatgtggctgctgggaactgaacctgggtcctc 139 Query: 73 tgaaagagcagccagtactcttaa 96 || | ||||| ||||| ||||||| Sbjct: 140 tggacgagcatccagttctcttaa 163 >D4Rat60 Length = 579 Score = 40.1 bits (20), Expect = 2e-04 Identities = 35/40 (87%), Positives = 35/40 (87%) Query: 18 gttacagacagttatgagctgccacgtgggtgctgggaat 57 |||||||| |||| ||||| |||||||||||||| |||| Sbjct: 305 gttacagatagttgtgagccaccacgtgggtgctgagaat 266 >D3Rat239 Length = 502 Score = 40.1 bits (20), Expect = 2e-04 Identities = 26/28 (92%), Positives = 26/28 (92%) Query: 86 agtactcttaacttctgggccatctctc 113 ||||||||||||| ||||||||| |||| Sbjct: 265 agtactcttaactgctgggccatatctc 238 >D15Rat64 Length = 559 Score = 36.2 bits (18), Expect = 0.003 Identities = 33/38 (86%), Positives = 33/38 (86%) Query: 76 aagagcagccagtactcttaacttctgggccatctctc 113 ||||||||||||| ||||||| ||| |||||||||| Sbjct: 279 aagagcagccagtgttcttaaccactgagccatctctc 242 >D6Rat82 Length = 437 Score = 32.2 bits (16), Expect = 0.050 Identities = 22/24 (91%), Positives = 22/24 (91%) Query: 13 ctggagttacagacagttatgagc 36 ||||||||||||| ||||||||| Sbjct: 167 ctggagttacagatggttatgagc 144 Score = 30.2 bits (15), Expect = 0.20 Identities = 21/23 (91%), Positives = 21/23 (91%) Query: 76 aagagcagccagtactcttaact 98 ||||||||||||| || |||||| Sbjct: 111 aagagcagccagtgctgttaact 89 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 139 Number of Sequences: 1828 Number of extensions: 139 Number of successful extensions: 57 Number of sequences better than 10: 29 length of query: 246 length of database: 1091843 effective HSP length: 14 effective length of query: 232 effective length of database: 1066251 effective search space: 247370232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)