BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 02636 (348 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D3Rat86 176 2e-45 D5Rat53 28 1.1 D13Rat156 26 4.4 >D3Rat86 Length = 484 Score = 176 bits (89), Expect = 2e-45 Identities = 91/92 (98%), Positives = 91/92 (98%) Query: 152 cgtaatcgcacgtgcacatatacaagaacaagttgaangacttgctaagcaactggacaa 211 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 126 cgtaatcgcacgtgcacatatacaagaacaagttgaaggacttgctaagcaactggacaa 185 Query: 212 tctccagtgaaactttattacaaacactgggg 243 |||||||||||||||||||||||||||||||| Sbjct: 186 tctccagtgaaactttattacaaacactgggg 217 Score = 69.9 bits (35), Expect = 3e-13 Identities = 35/35 (100%), Positives = 35/35 (100%) Query: 58 ctgtggcagttttcttcttgttgcatataatatca 92 ||||||||||||||||||||||||||||||||||| Sbjct: 38 ctgtggcagttttcttcttgttgcatataatatca 72 >D5Rat53 Length = 789 Score = 28.2 bits (14), Expect = 1.1 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 171 atacaagaacaagt 184 |||||||||||||| Sbjct: 213 atacaagaacaagt 200 >D13Rat156 Length = 840 Score = 26.3 bits (13), Expect = 4.4 Identities = 13/13 (100%), Positives = 13/13 (100%) Query: 13 ttagaagacagaa 25 ||||||||||||| Sbjct: 442 ttagaagacagaa 430 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 105 Number of Sequences: 1828 Number of extensions: 105 Number of successful extensions: 34 Number of sequences better than 10: 13 length of query: 348 length of database: 1091843 effective HSP length: 14 effective length of query: 334 effective length of database: 1066251 effective search space: 356127834 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)