BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 01976 (498 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D12Rat66 186 3e-48 D1Rat120 46 7e-06 D10Rat103 36 0.007 D15Rat65 32 0.10 D9Rat7 32 0.10 >D12Rat66 Length = 612 Score = 186 bits (94), Expect = 3e-48 Identities = 179/207 (86%), Positives = 179/207 (86%), Gaps = 3/207 (1%) Query: 111 ttataaagacaacatttaattggggttggcttacaggttcagaggttcagtccattaccg 170 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 212 ttataaggacaacatttaattgggactggcttacaggttcagaggttcagtccatca--- 268 Query: 171 tcaaggtgggaacatggcagcatccaggcaggcataatgcaggaggagctgagagttnta 230 ||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| || Sbjct: 269 tcaaggtgggagcatggcagcatccaggcaggcatggtgctggaggagctgagagttcta 328 Query: 231 catcttcatctgaaggctgctaggagaatactggctttcaggtagctaggatgagggtct 290 ||| |||| |||||||||||||||||| |||| ||| || | ||||||| |||| ||| Sbjct: 329 tatcatcatttgaaggctgctaggagaagactgtcttccaaggagctagggtgagtatct 388 Query: 291 taaagcacacacccacagtaacacact 317 |||||| | |||||||| ||||||| Sbjct: 389 taaagcccctgcccacagtgacacact 415 >D1Rat120 Length = 476 Score = 46.1 bits (23), Expect = 7e-06 Identities = 47/55 (85%), Positives = 47/55 (85%) Query: 237 catctgaaggctgctaggagaatactggctttcaggtagctaggatgagggtctt 291 |||||| |||| || || |||| |||||||| |||| ||| |||||||||||||| Sbjct: 31 catctgtaggcagccagcagaacactggcttccaggcagcgaggatgagggtctt 85 Score = 42.1 bits (21), Expect = 1e-04 Identities = 30/33 (90%), Positives = 30/33 (90%) Query: 276 ctaggatgagggtcttaaagcacacacccacag 308 ||||| ||||| ||||||||| ||||||||||| Sbjct: 106 ctagggtgaggctcttaaagcccacacccacag 138 >D10Rat103 Length = 565 Score = 36.2 bits (18), Expect = 0.007 Identities = 36/42 (85%), Positives = 36/42 (85%) Query: 115 aaagacaacatttaattggggttggcttacaggttcagaggt 156 ||||| |||||||||||| || |||| ||| | ||||||||| Sbjct: 235 aaagaaaacatttaattgaggctggcctaccgtttcagaggt 276 >D15Rat65 Length = 532 Score = 32.2 bits (16), Expect = 0.10 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 303 ccacagtaacacactc 318 |||||||||||||||| Sbjct: 277 ccacagtaacacactc 262 >D9Rat7 Length = 557 Score = 32.2 bits (16), Expect = 0.10 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 359 gctgccagacctgggc 374 |||||||||||||||| Sbjct: 324 gctgccagacctgggc 309 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 248 Number of Sequences: 1828 Number of extensions: 248 Number of successful extensions: 89 Number of sequences better than 10: 14 length of query: 498 length of database: 1091843 effective HSP length: 15 effective length of query: 483 effective length of database: 1064423 effective search space: 514116309 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)