BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 01254 (542 letters) Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db 1828 sequences; 1,091,843 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D3Rat67 115 1e-26 D18Rat71 28 1.8 D6Rat35 28 1.8 D2Rat330 28 1.8 >D3Rat67 Length = 446 Score = 115 bits (58), Expect = 1e-26 Identities = 73/78 (93%), Positives = 73/78 (93%) Query: 212 gctgaataaactctttcctccccaacctgcttcttggtcctgatgtttgtgcaggaatag 271 ||||||||||| |||||||||||| | |||||||||||| |||||||||| ||||||||| Sbjct: 446 gctgaataaaccctttcctccccagcttgcttcttggtcatgatgtttgtacaggaatag 387 Query: 272 aaaccctgactaagacag 289 |||||||||||||||||| Sbjct: 386 aaaccctgactaagacag 369 >D18Rat71 Length = 535 Score = 28.2 bits (14), Expect = 1.8 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 454 agtgagaagccact 467 |||||||||||||| Sbjct: 181 agtgagaagccact 168 >D6Rat35 Length = 586 Score = 28.2 bits (14), Expect = 1.8 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 226 ttcctccccaacct 239 |||||||||||||| Sbjct: 218 ttcctccccaacct 205 >D2Rat330 Length = 922 Score = 28.2 bits (14), Expect = 1.8 Identities = 14/14 (100%), Positives = 14/14 (100%) Query: 355 attcctcttctcct 368 |||||||||||||| Sbjct: 286 attcctcttctcct 273 Database: /ddhome/ono/home/wk_watanabe/whitehead_blast/db/WH.db Posted date: Feb 23, 1999 5:16 PM Number of letters in database: 1,091,843 Number of sequences in database: 1828 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 395 Number of Sequences: 1828 Number of extensions: 395 Number of successful extensions: 21 Number of sequences better than 10: 6 length of query: 542 length of database: 1091843 effective HSP length: 15 effective length of query: 527 effective length of database: 1064423 effective search space: 560950921 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 13 (26.3 bits)